View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13874_high_1 (Length: 666)

Name: NF13874_high_1
Description: NF13874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13874_high_1
NF13874_high_1
[»] chr5 (1 HSPs)
chr5 (19-660)||(30757044-30757685)


Alignment Details
Target: chr5 (Bit Score: 594; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 594; E-Value: 0
Query Start/End: Original strand, 19 - 660
Target Start/End: Original strand, 30757044 - 30757685
Alignment:
Q  19 gaacgtgaaccctttgagcggggttggatatgcttcgcgattatttttcttctttcgacttttagaaacaacaaaaataaaagaagtttcatcaccttct 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30757044 gaacgtgaaccctttgagcggggttggatatgcttcgcgattatttttcttctttcgacttttagaaacaacaaaaataaaagaagtttcatcaccttct 30757143  T
Q  119 gcttcagtttaatgagaaaccagctctaaaacatatgtgtggcgctcattatggctaaccaatgttcctcaattgtatatgtgacatcggacaaagcaaa 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  30757144 gcttcagtttaatgagaaaccagctctaaaacatatgtgtggcgctcattatggctaaccaatgttcctcaattgtatatgtgacaccggacaaagcaaa 30757243  T
Q  219 atgaaaagaagtgtttgatttagggttccacgcaatctgagccagtgtagtggacacttttgccgagtttttctgctataacagtataagcaacttgttc 318  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||    
T  30757244 atgaaaataagtgtttgatttagggttccacgcaatctgagccagtgtagtggacacttgtgccgagtttttatgctataacagtataagcaacttgttc 30757343  T
Q  319 ggcatttttaacttgagaatcattattaaaaaccttatctgcattaagaagtgtgggggttagaagtaacagggggttcagcatgacttgttggatgatc 418  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  30757344 ggcatttttaacttgagaatcattattaacaaccttatctgcattaagaagtgtgggggttagaagtaacagggggttcaacatgacttgttggatgatc 30757443  T
Q  419 attagcaacaatgagctcttcggtattaatcagctcaccatgaagcttttcctgaatatttgaagtgtcatcagtaccgaatgaaattgtggcagggata 518  Q
    ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30757444 attagtaacgatgagctcttcggtattaatcagctcaccatgaagcttttcctgaatatttgaagtgtcatcagtaccgaatgaaattgtggcagggata 30757543  T
Q  519 tgctcttcattcacaatggcaataaccgccttattagtaattggtgctgcaaaagctttagaagaacctataccatcaggatctttcttttcaacatatt 618  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| ||||||||||||||||    
T  30757544 tgctcttcattcacaatggcaataaccgccttattagtaattggcgctgcaaaagctttagaagaacctataccatcatgatcgttcttttcaacatatt 30757643  T
Q  619 tcagagtcatttgcttccgagcatgtgtaggtttcttgtcac 660  Q
    ||||||||||||||||||||||||||||||||||||| ||||    
T  30757644 tcagagtcatttgcttccgagcatgtgtaggtttcttctcac 30757685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University