View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13874_high_3 (Length: 330)
Name: NF13874_high_3
Description: NF13874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13874_high_3 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 206; Significance: 1e-112; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 27 - 279
Target Start/End: Complemental strand, 4328549 - 4328296
Alignment:
| Q |
27 |
tgtttaagagacttgctactcctcactcgaatcaaaccacatcagtttgatagcctaaccaagaataatttaaagttacataattgaacaannnnnnnn- |
125 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4328549 |
tgtttaagagacttgctactcctcactcgaatcaaaccacatcagtttgatagcctaaccaagaataatttaaagttacataattgaacaattttttttt |
4328450 |
T |
|
| Q |
126 |
gaataagctaaataacataattgaacaattacatgaagttcctcttccataacttaacctttatctactcatgatgtataaacacatattaatacaaaca |
225 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
4328449 |
gaataagctaaataacataattgaacaattacatgaagttcctcttccataacttaacctttatctactcatgatgtataaacatatattaatacaaaca |
4328350 |
T |
|
| Q |
226 |
taagaaaagaatcaccggtggatgcttcctttcctccagaagtgcttcgatcac |
279 |
Q |
| |
|
||||||||||||||| ||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
4328349 |
taagaaaagaatcactagtggatgcttcctttgctccagaagtgcttcgatcac |
4328296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 219 - 249
Target Start/End: Original strand, 30041255 - 30041285
Alignment:
| Q |
219 |
acaaacataagaaaagaatcaccggtggatg |
249 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
30041255 |
acaaacataagaaaagaatcaccggtggatg |
30041285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 185 - 221
Target Start/End: Original strand, 30041209 - 30041245
Alignment:
| Q |
185 |
tttatctactcatgatgtataaacacatattaataca |
221 |
Q |
| |
|
|||| ||||||||| |||||||||||||||||||||| |
|
|
| T |
30041209 |
tttagctactcatgttgtataaacacatattaataca |
30041245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 185 - 221
Target Start/End: Complemental strand, 24131738 - 24131702
Alignment:
| Q |
185 |
tttatctactcatgatgtataaacacatattaataca |
221 |
Q |
| |
|
|||| |||||||||||||||||||||| ||||||||| |
|
|
| T |
24131738 |
tttacctactcatgatgtataaacacacattaataca |
24131702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University