View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13874_low_1 (Length: 666)

Name: NF13874_low_1
Description: NF13874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13874_low_1
NF13874_low_1
[»] chr5 (1 HSPs)
chr5 (19-660)||(30757044-30757685)


Alignment Details
Target: chr5 (Bit Score: 594; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 594; E-Value: 0
Query Start/End: Original strand, 19 - 660
Target Start/End: Original strand, 30757044 - 30757685
Alignment:
Q  19 gaacgtgaaccctttgagcggggttggatatgcttcgcgattatttttcttctttcgacttttagaaacaacaaaaataaaagaagtttcatcaccttct 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30757044 gaacgtgaaccctttgagcggggttggatatgcttcgcgattatttttcttctttcgacttttagaaacaacaaaaataaaagaagtttcatcaccttct 30757143  T
Q  119 gcttcagtttaatgagaaaccagctctaaaacatatgtgtggcgctcattatggctaaccaatgttcctcaattgtatatgtgacatcggacaaagcaaa 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  30757144 gcttcagtttaatgagaaaccagctctaaaacatatgtgtggcgctcattatggctaaccaatgttcctcaattgtatatgtgacaccggacaaagcaaa 30757243  T
Q  219 atgaaaagaagtgtttgatttagggttccacgcaatctgagccagtgtagtggacacttttgccgagtttttctgctataacagtataagcaacttgttc 318  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||    
T  30757244 atgaaaataagtgtttgatttagggttccacgcaatctgagccagtgtagtggacacttgtgccgagtttttatgctataacagtataagcaacttgttc 30757343  T
Q  319 ggcatttttaacttgagaatcattattaaaaaccttatctgcattaagaagtgtgggggttagaagtaacagggggttcagcatgacttgttggatgatc 418  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  30757344 ggcatttttaacttgagaatcattattaacaaccttatctgcattaagaagtgtgggggttagaagtaacagggggttcaacatgacttgttggatgatc 30757443  T
Q  419 attagcaacaatgagctcttcggtattaatcagctcaccatgaagcttttcctgaatatttgaagtgtcatcagtaccgaatgaaattgtggcagggata 518  Q
    ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30757444 attagtaacgatgagctcttcggtattaatcagctcaccatgaagcttttcctgaatatttgaagtgtcatcagtaccgaatgaaattgtggcagggata 30757543  T
Q  519 tgctcttcattcacaatggcaataaccgccttattagtaattggtgctgcaaaagctttagaagaacctataccatcaggatctttcttttcaacatatt 618  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| ||||||||||||||||    
T  30757544 tgctcttcattcacaatggcaataaccgccttattagtaattggcgctgcaaaagctttagaagaacctataccatcatgatcgttcttttcaacatatt 30757643  T
Q  619 tcagagtcatttgcttccgagcatgtgtaggtttcttgtcac 660  Q
    ||||||||||||||||||||||||||||||||||||| ||||    
T  30757644 tcagagtcatttgcttccgagcatgtgtaggtttcttctcac 30757685  T

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