View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13874_low_2 (Length: 475)
Name: NF13874_low_2
Description: NF13874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13874_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 65 - 459
Target Start/End: Original strand, 18101483 - 18101877
Alignment:
| Q |
65 |
cttgtgtgtcattgttatttcttcatcatattttgtggtattttactattttaccttgtttgatttgattgcaagtggcattaccttgttttaaatttta |
164 |
Q |
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| T |
18101483 |
cttgtgtgtcattgttatttcttcatcatattttgtggtattttactattttaccttgtttgatttgattgcaagtggcattaccttgtttgaaatttta |
18101582 |
T |
|
| Q |
165 |
taccaatcagaactttgatacatctatgaatcaatgtctgtcttcaagtctctgtttttatattctttttggataatgatatataatttggttggttaac |
264 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18101583 |
taccaatcagaactttgatacatctatgaatcaatgtctgtcttcaagtctttgtttttatattctttttggataatgatatataatttggttggttaac |
18101682 |
T |
|
| Q |
265 |
ttggtcctaaacaacactacaccaccnnnnnnntaaacaccagtcgtattcgtcgtgagtaatgaatgacgctcatccgatggatcaagaagagtcacat |
364 |
Q |
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|| ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
18101683 |
ttagtcctaaacaacactacaccaccaaaaaaataaacacatgtcgtattcgtcgtgagtaatgaatgacgctcagccgatggatcaagaagagtcacat |
18101782 |
T |
|
| Q |
365 |
accactattcgattgtgctccaagcttggagaaataatcggtaaacatattacctttcctaagagtttgatgcactacaaaatcaatcattatcg |
459 |
Q |
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| T |
18101783 |
accactattcgattgtgctccaagcttggagaaataatcggtaaacatattacctttcctaagagtgtgatgcactacaaaatcaatcattatcg |
18101877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 65 - 459
Target Start/End: Original strand, 37859091 - 37859485
Alignment:
| Q |
65 |
cttgtgtgtcattgttatttcttcatcatattttgtggtattttactattttaccttgtttgatttgattgcaagtggcattaccttgttttaaatttta |
164 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
37859091 |
cttgtgtgtcattgttatttcttcatcatattttgtggtattttactattttaccttgtttgatttgattgcaagtggcattaccttgtttgaaatttta |
37859190 |
T |
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| Q |
165 |
taccaatcagaactttgatacatctatgaatcaatgtctgtcttcaagtctctgtttttatattctttttggataatgatatataatttggttggttaac |
264 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37859191 |
taccaatcagaactttgatacatctatgaatcaatgtctgtcttcaagtctttgtttttatattctttttggataatgatatataatttggttggttaac |
37859290 |
T |
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| Q |
265 |
ttggtcctaaacaacactacaccaccnnnnnnntaaacaccagtcgtattcgtcgtgagtaatgaatgacgctcatccgatggatcaagaagagtcacat |
364 |
Q |
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|| ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
37859291 |
ttagtcctaaacaacactacaccaccaaaaaaataaacacatgtcgtattcgtcgtgagtaatgaatgacgctcagccgatggatcaagaagagtcacat |
37859390 |
T |
|
| Q |
365 |
accactattcgattgtgctccaagcttggagaaataatcggtaaacatattacctttcctaagagtttgatgcactacaaaatcaatcattatcg |
459 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
37859391 |
accactattcgattgtgctccaagcttggagaaataatcggtaaacatattacctttcctaagagtgtgatgcactacaaaatcaatcattatcg |
37859485 |
T |
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