View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13874_low_5 (Length: 203)
Name: NF13874_low_5
Description: NF13874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13874_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 128; Significance: 2e-66; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 7 - 185
Target Start/End: Complemental strand, 6464155 - 6463975
Alignment:
| Q |
7 |
agtagcataggagtcggagagatagattgatgtggattcgtatctcctactaacatttctaacaaatgcatactaacaattttgtatataaaa-gttcct |
105 |
Q |
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| T |
6464155 |
agtaacataagagtcggagagatagattgatgtggattcgtatctcctactaacatttctaacaaatgcatactaacatttttgtatataaaatgttcct |
6464056 |
T |
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| Q |
106 |
caagattatggagaaatagaattttatc-nnnnnnngtagagtagaaaaacttgtaaattatcaatttttgtgactaatga |
185 |
Q |
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| T |
6464055 |
caagattatggagaaatagaattttatcaaaaaaaagtagagtagaaaaacttgtaaattatcaattttggtgactaatga |
6463975 |
T |
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Target: chr7; HSP #2
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 23 - 185
Target Start/End: Complemental strand, 6453417 - 6453253
Alignment:
| Q |
23 |
gagagatagattgatgtggattcgtatctcctactaacatttctaacaaatgcatactaacaattttgtatataaaa-gttcctcaagattatggagaaa |
121 |
Q |
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| T |
6453417 |
gagagatagattgatgtggattcgtatcccctactaacatttgtaacaaatacatactaacatttttgtatataaaatgtttctcaagattatggagaaa |
6453318 |
T |
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| Q |
122 |
tagaattttat-cnnnnnnngtagagtagaaaaacttgtaaattatcaatttttgtgactaatga |
185 |
Q |
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| T |
6453317 |
tgaaattttataaaaaaacagtacagtagaaatgcttgtaaattatcaattttggtgactgatga |
6453253 |
T |
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