View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13875_low_1 (Length: 358)

Name: NF13875_low_1
Description: NF13875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13875_low_1
NF13875_low_1
[»] chr2 (24 HSPs)
chr2 (92-243)||(2752737-2752888)
chr2 (148-250)||(13685993-13686095)
chr2 (151-250)||(42263834-42263933)
chr2 (148-250)||(28716436-28716538)
chr2 (169-250)||(25414934-25415015)
chr2 (148-241)||(28429281-28429374)
chr2 (157-241)||(35676383-35676467)
chr2 (157-241)||(41465005-41465089)
chr2 (172-250)||(19898943-19899021)
chr2 (148-250)||(35323572-35323674)
chr2 (148-246)||(45093250-45093344)
chr2 (166-237)||(14941098-14941169)
chr2 (163-241)||(3810375-3810453)
chr2 (152-241)||(23454366-23454456)
chr2 (148-240)||(36690927-36691019)
chr2 (148-195)||(16058525-16058572)
chr2 (157-241)||(29689326-29689407)
chr2 (299-344)||(2752604-2752649)
chr2 (151-194)||(41464901-41464944)
chr2 (299-332)||(13686158-13686191)
chr2 (299-332)||(14940988-14941021)
chr2 (299-332)||(35676272-35676305)
chr2 (304-332)||(19899089-19899117)
chr2 (304-332)||(24413873-24413901)
[»] chr1 (23 HSPs)
chr1 (148-250)||(20808947-20809049)
chr1 (148-250)||(29095619-29095721)
chr1 (148-250)||(34475899-34476001)
chr1 (148-250)||(24135755-24135855)
chr1 (149-250)||(31032794-31032895)
chr1 (147-250)||(42480120-42480223)
chr1 (152-238)||(1270175-1270261)
chr1 (149-246)||(4194767-4194864)
chr1 (152-229)||(9098684-9098761)
chr1 (147-233)||(41646575-41646660)
chr1 (147-250)||(16254854-16254956)
chr1 (148-216)||(7167455-7167523)
chr1 (148-250)||(34807936-34808038)
chr1 (152-236)||(45010204-45010288)
chr1 (207-250)||(44714905-44714948)
chr1 (148-241)||(47550791-47550884)
chr1 (148-240)||(50663730-50663823)
chr1 (148-184)||(2958833-2958869)
chr1 (299-332)||(4624503-4624536)
chr1 (299-332)||(16255019-16255052)
chr1 (206-250)||(2958788-2958832)
chr1 (299-331)||(41647392-41647424)
chr1 (152-196)||(47550943-47550987)
[»] chr3 (18 HSPs)
chr3 (147-241)||(31788304-31788398)
chr3 (149-241)||(50612980-50613072)
chr3 (148-241)||(45166226-45166319)
chr3 (148-250)||(521861-521963)
chr3 (148-250)||(1561352-1561454)
chr3 (148-241)||(23643085-23643178)
chr3 (148-250)||(38176486-38176588)
chr3 (148-241)||(36517514-36517607)
chr3 (148-234)||(34624589-34624674)
chr3 (151-246)||(39145254-39145349)
chr3 (152-237)||(51297135-51297219)
chr3 (152-237)||(52546746-52546831)
chr3 (148-218)||(43203248-43203318)
chr3 (158-241)||(20912177-20912260)
chr3 (148-195)||(544634-544681)
chr3 (299-339)||(45166391-45166431)
chr3 (299-332)||(23642980-23643013)
chr3 (299-332)||(39145416-39145449)
[»] chr5 (17 HSPs)
chr5 (148-241)||(32891174-32891267)
chr5 (148-241)||(228023-228116)
chr5 (152-250)||(4391942-4392040)
chr5 (151-240)||(8692511-8692600)
chr5 (149-250)||(11739316-11739417)
chr5 (148-250)||(41326545-41326647)
chr5 (152-241)||(37094017-37094106)
chr5 (148-241)||(29223465-29223556)
chr5 (148-234)||(34286594-34286679)
chr5 (169-241)||(3456773-3456845)
chr5 (148-250)||(38614277-38614383)
chr5 (148-250)||(5481358-5481454)
chr5 (157-243)||(28434210-28434296)
chr5 (168-225)||(31644658-31644715)
chr5 (152-225)||(35672431-35672504)
chr5 (148-185)||(42148869-42148906)
chr5 (152-192)||(43141523-43141563)
[»] chr7 (7 HSPs)
chr7 (148-249)||(17611842-17611943)
chr7 (151-241)||(27425859-27425949)
chr7 (148-250)||(23992047-23992149)
chr7 (145-241)||(22326855-22326951)
chr7 (148-239)||(8307525-8307616)
chr7 (148-192)||(19479441-19479485)
chr7 (149-247)||(41405814-41405912)
[»] chr4 (17 HSPs)
chr4 (148-236)||(24683076-24683164)
chr4 (148-250)||(41633217-41633319)
chr4 (148-250)||(18375487-18375589)
chr4 (148-250)||(26179307-26179409)
chr4 (148-231)||(47281652-47281735)
chr4 (148-233)||(41878321-41878406)
chr4 (148-195)||(4098533-4098580)
chr4 (162-250)||(37674097-37674185)
chr4 (147-219)||(17847665-17847737)
chr4 (148-250)||(23348213-23348316)
chr4 (299-334)||(47282226-47282261)
chr4 (152-194)||(37674003-37674045)
chr4 (299-332)||(41633381-41633414)
chr4 (148-185)||(47839093-47839130)
chr4 (299-332)||(52726037-52726070)
chr4 (304-332)||(23348114-23348142)
chr4 (203-239)||(54358167-54358203)
[»] scaffold0002 (1 HSPs)
scaffold0002 (151-250)||(492669-492768)
[»] chr8 (21 HSPs)
chr8 (148-243)||(8551489-8551584)
chr8 (158-241)||(39112658-39112741)
chr8 (156-241)||(29314007-29314092)
chr8 (148-241)||(41322529-41322622)
chr8 (148-240)||(4851733-4851825)
chr8 (148-250)||(15562011-15562113)
chr8 (152-234)||(34392112-34392194)
chr8 (148-194)||(1196507-1196553)
chr8 (177-243)||(37919643-37919709)
chr8 (170-250)||(36473146-36473226)
chr8 (186-233)||(4794159-4794206)
chr8 (299-332)||(4824307-4824340)
chr8 (167-240)||(11653817-11653894)
chr8 (152-194)||(36473052-36473094)
chr8 (304-341)||(1416041-1416078)
chr8 (148-181)||(3607036-3607069)
chr8 (156-185)||(11643302-11643331)
chr8 (168-225)||(33888885-33888942)
chr8 (299-332)||(33889013-33889046)
chr8 (299-332)||(41322694-41322727)
chr8 (152-196)||(33889000-33889044)
[»] chr6 (6 HSPs)
chr6 (157-240)||(7646881-7646964)
chr6 (148-227)||(17366850-17366929)
chr6 (152-250)||(25935512-25935610)
chr6 (168-241)||(12607166-12607239)
chr6 (148-185)||(14017890-14017927)
chr6 (304-332)||(17366986-17367014)
[»] scaffold0132 (2 HSPs)
scaffold0132 (157-250)||(545-637)
scaffold0132 (157-250)||(8505-8597)
[»] scaffold0188 (1 HSPs)
scaffold0188 (148-185)||(15977-16014)


Alignment Details
Target: chr2 (Bit Score: 136; Significance: 7e-71; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 92 - 243
Target Start/End: Complemental strand, 2752888 - 2752737
Alignment:
Q  92 ctggtttgatgtaggttagatcgtaactcggaagtcgatctgacttattttcatccgagcaatgatatatctctagaaaaataacatcaagaattcttca 191  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||    
T  2752888 ctggtttgatgtaggttagatcgtaactcggaagtcgatctgacttattttcatccgagcaatgatatatttctagaaaaataacattaagaattcttca 2752789  T
Q  192 agaaaaaataacagccaatcacaatgcattatttgccacaattcaaggagat 243  Q
    |||||||||| ||||||||||||||||| |||||||||||||||||||||||    
T  2752788 agaaaaaatagcagccaatcacaatgcactatttgccacaattcaaggagat 2752737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 148 - 250
Target Start/End: Original strand, 13685993 - 13686095
Alignment:
Q  148 gagcaatgatatatctctagaaaaataacatcaagaattcttcaagaaaaaataacagccaatcacaatgcattatttgccacaattcaaggagatatgg 247  Q
    |||||||| |||||||||||||||||||||||||||||| |||||||| ||| | ||||||||||||||||| || |||||||||||||||||| | |||    
T  13685993 gagcaatgctatatctctagaaaaataacatcaagaatttttcaagaataaagagcagccaatcacaatgcactacttgccacaattcaaggaggtgtgg 13686092  T
Q  248 ctg 250  Q
    |||    
T  13686093 ctg 13686095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 151 - 250
Target Start/End: Original strand, 42263834 - 42263933
Alignment:
Q  151 caatgatatatctctagaaaaataacatcaagaattcttcaagaaaaaataacagccaatcacaatgcattatttgccacaattcaaggagatatggctg 250  Q
    ||||| ||||||||||||||||||||||||||||||||||||||| ||| | |||||||||||||||||  ||||| |||||||||||||| | ||||||    
T  42263834 caatgttatatctctagaaaaataacatcaagaattcttcaagaataaagagcagccaatcacaatgcacaatttgtcacaattcaaggaggtgtggctg 42263933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 148 - 250
Target Start/End: Complemental strand, 28716538 - 28716436
Alignment:
Q  148 gagcaatgatatatctctagaaaaataacatcaagaattcttcaagaaaaaataacagccaatcacaatgcattatttgccacaattcaaggagatatgg 247  Q
    |||||||| ||||||||||||||||| ||||||||||||||||||||| |||||  |||| ||||||||||| ||||||||||||||||| ||| | |||    
T  28716538 gagcaatgttatatctctagaaaaatgacatcaagaattcttcaagaataaatagtagccgatcacaatgcactatttgccacaattcaaagaggtgtgg 28716439  T
Q  248 ctg 250  Q
    |||    
T  28716438 ctg 28716436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 169 - 250
Target Start/End: Original strand, 25414934 - 25415015
Alignment:
Q  169 aaaataacatcaagaattcttcaagaaaaaataacagccaatcacaatgcattatttgccacaattcaaggagatatggctg 250  Q
    ||||||||||||||||||||||||||| ||| ||||| ||||||||||||| ||||||||||||||||||||| ||||||||    
T  25414934 aaaataacatcaagaattcttcaagaataaagaacagtcaatcacaatgcactatttgccacaattcaaggaggtatggctg 25415015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 148 - 241
Target Start/End: Original strand, 28429281 - 28429374
Alignment:
Q  148 gagcaatgatatatctctagaaaaataacatcaagaattcttcaagaaaaaataacagccaatcacaatgcattatttgccacaattcaaggag 241  Q
    |||||||| ||||||| ||||||||||| ||||||||||||||||||| ||| | ||||||| ||||||||||||||||||| |||| ||||||    
T  28429281 gagcaatgctatatctttagaaaaataatatcaagaattcttcaagaataaagagcagccaaacacaatgcattatttgccataatttaaggag 28429374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 157 - 241
Target Start/End: Complemental strand, 35676467 - 35676383
Alignment:
Q  157 tatatctctagaaaaataacatcaagaattcttcaagaaaaaataacagccaatcacaatgcattatttgccacaattcaaggag 241  Q
    |||||||||| |||||||||||||||||||||| ||||| ||| | ||| ||| ||||||||| |||||||||||||||||||||    
T  35676467 tatatctctaaaaaaataacatcaagaattctttaagaataaagagcagtcaaccacaatgcactatttgccacaattcaaggag 35676383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 157 - 241
Target Start/End: Complemental strand, 41465089 - 41465005
Alignment:
Q  157 tatatctctagaaaaataacatcaagaattcttcaagaaaaaataacagccaatcacaatgcattatttgccacaattcaaggag 241  Q
    ||||||||||||||||||||||||||||||||||||||| |||   ||||  ||||||||||| |||||||| ||||||||||||    
T  41465089 tatatctctagaaaaataacatcaagaattcttcaagaataaagtgcagcggatcacaatgcactatttgccgcaattcaaggag 41465005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 172 - 250
Target Start/End: Original strand, 19898943 - 19899021
Alignment:
Q  172 ataacatcaagaattcttcaagaaaaaataacagccaatcacaatgcattatttgccacaattcaaggagatatggctg 250  Q
    ||||||| |||||||||||||||| ||| | |||||||||||||||||||||||| |||||||||||||| ||| ||||    
T  19898943 ataacattaagaattcttcaagaataaagagcagccaatcacaatgcattatttgtcacaattcaaggaggtattgctg 19899021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 148 - 250
Target Start/End: Complemental strand, 35323674 - 35323572
Alignment:
Q  148 gagcaatgatatatctctagaaaaataacatcaagaattcttcaagaaaaaataacagccaatcacaatgcattatttgccacaattcaaggagatatgg 247  Q
    ||||| || ||||| | ||||||||||||||||| ||||||||||||| ||| ||||| |||||||||| || ||||||||||||||||| ||| | |||    
T  35323674 gagcagtgctatatttatagaaaaataacatcaaaaattcttcaagaataaagaacagtcaatcacaatacactatttgccacaattcaatgaggtgtgg 35323575  T
Q  248 ctg 250  Q
    |||    
T  35323574 ctg 35323572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 148 - 246
Target Start/End: Complemental strand, 45093344 - 45093250
Alignment:
Q  148 gagcaatgatatatctctagaaaaataacatcaagaattcttcaagaaaaaataacagccaatcacaatgcattatttgccacaattcaaggagatatg 246  Q
    ||||| || ||||||||||||||||||||||||| ||||||||||||| ||| |     ||||||||||||| ||||||||||||||||||||| ||||    
T  45093344 gagcagtgctatatctctagaaaaataacatcaataattcttcaagaataaaga----gcaatcacaatgcactatttgccacaattcaaggaggtatg 45093250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 166 - 237
Target Start/End: Complemental strand, 14941169 - 14941098
Alignment:
Q  166 agaaaaataacatcaagaattcttcaagaaaaaataacagccaatcacaatgcattatttgccacaattcaa 237  Q
    |||||||||||||||| ||||||||||||| ||| | ||| ||||||||||||| |||||||||||||||||    
T  14941169 agaaaaataacatcaataattcttcaagaataaagagcagtcaatcacaatgcactatttgccacaattcaa 14941098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 163 - 241
Target Start/End: Complemental strand, 3810453 - 3810375
Alignment:
Q  163 tctagaaaaataacatcaagaattcttcaagaaaaaataacagccaatcacaatgcattatttgccacaattcaaggag 241  Q
    |||||||||||||||| || ||||||||||||| ||| |  ||||||| |||||||| |||||||||||||||||||||    
T  3810453 tctagaaaaataacattaataattcttcaagaataaagagtagccaattacaatgcactatttgccacaattcaaggag 3810375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 152 - 241
Target Start/End: Complemental strand, 23454456 - 23454366
Alignment:
Q  152 aatgatatatctctagaaaaataacatcaagaattcttcaagaaaaaataacagccaatcacaatgca-ttatttgccacaattcaaggag 241  Q
    |||| |||||||||||||||||||||| || ||||||||||||| ||| | ||| ||||||||||||| | ||||| ||||||||||||||    
T  23454456 aatgctatatctctagaaaaataacataaaaaattcttcaagaataaagagcagtcaatcacaatgcactaatttgacacaattcaaggag 23454366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 148 - 240
Target Start/End: Complemental strand, 36691019 - 36690927
Alignment:
Q  148 gagcaatgatatatctctagaaaaataacatcaagaattcttcaagaaaaaataacagccaatcacaatgcattatttgccacaattcaagga 240  Q
    |||||||| |||||||||| ||| |||||||||| |||||||||| || ||| |||| ||||| | ||| || ||||||||||||||||||||    
T  36691019 gagcaatgttatatctctaaaaatataacatcaaaaattcttcaaaaataaaaaacatccaattataatacagtatttgccacaattcaagga 36690927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 148 - 195
Target Start/End: Complemental strand, 16058572 - 16058525
Alignment:
Q  148 gagcaatgatatatctctagaaaaataacatcaagaattcttcaagaa 195  Q
    |||||||| |||||||||||||||||||||| ||||||||||||||||    
T  16058572 gagcaatgctatatctctagaaaaataacattaagaattcttcaagaa 16058525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 157 - 241
Target Start/End: Complemental strand, 29689407 - 29689326
Alignment:
Q  157 tatatctctagaaaaataacatcaagaattcttcaagaaaaaataacagccaatcacaatgcattatttgccacaattcaaggag 241  Q
    |||||||||||||||||||||||||||||| || ||||| |   || ||| |||||||||||| ||||||| | |||||||||||    
T  29689407 tatatctctagaaaaataacatcaagaattttttaagaata---aagagcaaatcacaatgcactatttgctataattcaaggag 29689326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 299 - 344
Target Start/End: Complemental strand, 2752649 - 2752604
Alignment:
Q  299 tcttaatgctatttttctagagaaatagcatttttcattttcatcc 344  Q
    |||| ||||||||||||||||||||||||| ||| |||||||||||    
T  2752649 tcttgatgctatttttctagagaaatagcaatttccattttcatcc 2752604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 151 - 194
Target Start/End: Original strand, 41464901 - 41464944
Alignment:
Q  151 caatgatatatctctagaaaaataacatcaagaattcttcaaga 194  Q
    ||||| ||| |||||||||||||||||||||||||| |||||||    
T  41464901 caatgttatttctctagaaaaataacatcaagaatttttcaaga 41464944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 332
Target Start/End: Original strand, 13686158 - 13686191
Alignment:
Q  299 tcttaatgctatttttctagagaaatagcatttt 332  Q
    |||| |||||||||||||||||||||||||||||    
T  13686158 tcttgatgctatttttctagagaaatagcatttt 13686191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 332
Target Start/End: Complemental strand, 14941021 - 14940988
Alignment:
Q  299 tcttaatgctatttttctagagaaatagcatttt 332  Q
    |||| |||||||||||||||||||||||||||||    
T  14941021 tcttgatgctatttttctagagaaatagcatttt 14940988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 332
Target Start/End: Complemental strand, 35676305 - 35676272
Alignment:
Q  299 tcttaatgctatttttctagagaaatagcatttt 332  Q
    |||| |||||||||||||||||||||||||||||    
T  35676305 tcttgatgctatttttctagagaaatagcatttt 35676272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 304 - 332
Target Start/End: Original strand, 19899089 - 19899117
Alignment:
Q  304 atgctatttttctagagaaatagcatttt 332  Q
    |||||||||||||||||||||||||||||    
T  19899089 atgctatttttctagagaaatagcatttt 19899117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 304 - 332
Target Start/End: Original strand, 24413873 - 24413901
Alignment:
Q  304 atgctatttttctagagaaatagcatttt 332  Q
    |||||||||||||||||||||||||||||    
T  24413873 atgctatttttctagagaaatagcatttt 24413901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 79; Significance: 7e-37; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 148 - 250
Target Start/End: Original strand, 20808947 - 20809049
Alignment:
Q  148 gagcaatgatatatctctagaaaaataacatcaagaattcttcaagaaaaaataacagccaatcacaatgcattatttgccacaattcaaggagatatgg 247  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||| ||| | ||| ||||||||||||||||||||||||||||||||||||| |||    
T  20808947 gagcaatgctatatctctagaaaaataacatcaagaattcttcaagaataaagagcagtcaatcacaatgcattatttgccacaattcaaggagatgtgg 20809046  T
Q  248 ctg 250  Q
    |||    
T  20809047 ctg 20809049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 148 - 250
Target Start/End: Complemental strand, 29095721 - 29095619
Alignment:
Q  148 gagcaatgatatatctctagaaaaataacatcaagaattcttcaagaaaaaataacagccaatcacaatgcattatttgccacaattcaaggagatatgg 247  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||||| ||||||||||||||||||||| | |||    
T  29095721 gagcaatgttatatctctagaaaaataacatcaagaattcttcaagaataaagagcagccaatcacaatgcactatttgccacaattcaaggaggtgtgg 29095622  T
Q  248 ctg 250  Q
    |||    
T  29095621 ctg 29095619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 148 - 250
Target Start/End: Original strand, 34475899 - 34476001
Alignment:
Q  148 gagcaatgatatatctctagaaaaataacatcaagaattcttcaagaaaaaataacagccaatcacaatgcattatttgccacaattcaaggagatatgg 247  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||||| ||| |||| |||||||||||| | |||    
T  34475899 gagcaatgctatatctctagaaaaataacatcaagaattcttcaagaataaagagcagccaatcacaatgcactatctgccccaattcaaggaggtgtgg 34475998  T
Q  248 ctg 250  Q
    |||    
T  34475999 ctg 34476001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 148 - 250
Target Start/End: Original strand, 24135755 - 24135855
Alignment:
Q  148 gagcaatgatatatctctagaaaaataacatcaagaattcttcaagaaaaaataacagccaatcacaatgcattatttgccacaattcaaggagatatgg 247  Q
    ||||||||| ||||||| |||||||||||||||||||||||||||||| ||| | |||||||||||||||||  |||||||||||||||||||| | |||    
T  24135755 gagcaatgacatatctcaagaaaaataacatcaagaattcttcaagaataaagagcagccaatcacaatgca--atttgccacaattcaaggaggtgtgg 24135852  T
Q  248 ctg 250  Q
    |||    
T  24135853 ctg 24135855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 149 - 250
Target Start/End: Complemental strand, 31032895 - 31032794
Alignment:
Q  149 agcaatgatatatctctagaaaaataacatcaagaattcttcaagaaaaaataacagccaatcacaatgcattatttgccacaattcaaggagatatggc 248  Q
    ||||||| |||||||||||||||||| |||||||||||||||||||| ||| | ||| ||||||||||||| ||||||||||| ||||||||| | ||||    
T  31032895 agcaatgttatatctctagaaaaatatcatcaagaattcttcaagaataaagatcagtcaatcacaatgcactatttgccacagttcaaggaggtgtggc 31032796  T
Q  249 tg 250  Q
    ||    
T  31032795 tg 31032794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 147 - 250
Target Start/End: Original strand, 42480120 - 42480223
Alignment:
Q  147 cgagcaatgatatatctctagaaaaataacatcaagaattcttcaagaaaaaataacagccaatcacaatgcattatttgccacaattcaaggagatatg 246  Q
    ||||||||| |||||||||| |||||||||||||||||||||||||||| ||||| ||| |||| |||||| ||||||| ||||||||||| ||| | ||    
T  42480120 cgagcaatgttatatctctacaaaaataacatcaagaattcttcaagaataaatagcagtcaattacaatgtattatttaccacaattcaatgaggtgtg 42480219  T
Q  247 gctg 250  Q
    ||||    
T  42480220 gctg 42480223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 152 - 238
Target Start/End: Original strand, 1270175 - 1270261
Alignment:
Q  152 aatgatatatctctagaaaaataacatcaagaattcttcaagaaaaaataacagccaatcacaatgcattatttgccacaattcaag 238  Q
    |||| ||||||||||||||||||||||||||||||||||||||| ||| | || |||||| ||||||| ||||||||||||||||||    
T  1270175 aatgctatatctctagaaaaataacatcaagaattcttcaagaataaagagcaaccaatctcaatgcactatttgccacaattcaag 1270261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 149 - 246
Target Start/End: Original strand, 4194767 - 4194864
Alignment:
Q  149 agcaatgatatatctctagaaaaataacatcaagaattcttcaagaaaaaataacagccaatcacaatgcattatttgccacaattcaaggagatatg 246  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||| ||| ||||| ||||||||||  | ||||| ||| ||||||| ||||||||    
T  4194767 agcaatgctatatctctagaaaaataacatcaagaattcttcaagaataaagaacagtcaatcacaatatactatttaccataattcaaagagatatg 4194864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 152 - 229
Target Start/End: Complemental strand, 9098761 - 9098684
Alignment:
Q  152 aatgatatatctctagaaaaataacatcaagaattcttcaagaaaaaataacagccaatcacaatgcattatttgcca 229  Q
    |||||||||||||||||||||||||||||||||||||| ||||| ||| | ||||||||||||||||| ||| |||||    
T  9098761 aatgatatatctctagaaaaataacatcaagaattctttaagaataaagagcagccaatcacaatgcactatctgcca 9098684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 147 - 233
Target Start/End: Original strand, 41646575 - 41646660
Alignment:
Q  147 cgagcaatgatatatctctagaaaaataacatcaagaattcttcaagaaaaaataacagccaatcacaatgcattatttgccacaat 233  Q
    ||||||||| | |||||||||||||||||||||| |||||||||||||| ||| | ||| ||||||||||||| |||||||||||||    
T  41646575 cgagcaatgctgtatctctagaaaaataacatca-gaattcttcaagaataaagagcagtcaatcacaatgcactatttgccacaat 41646660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 147 - 250
Target Start/End: Original strand, 16254854 - 16254956
Alignment:
Q  147 cgagcaatgatatatctctagaaaaataacatcaagaattcttcaagaaaaaataacagccaatcacaatgcattatttgccacaattcaaggagatatg 246  Q
    ||||||||  ||||||| | |||||||||||| |||||||||||||||| ||| | ||||||||||||||||| ||||||||| |||| |||||| | ||    
T  16254854 cgagcaatattatatctttggaaaaataacat-aagaattcttcaagaataaagatcagccaatcacaatgcactatttgccataatttaaggaggtgtg 16254952  T
Q  247 gctg 250  Q
    ||||    
T  16254953 gctg 16254956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 148 - 216
Target Start/End: Complemental strand, 7167523 - 7167455
Alignment:
Q  148 gagcaatgatatatctctagaaaaataacatcaagaattcttcaagaaaaaataacagccaatcacaat 216  Q
    |||||||| ||||| |||| ||||||||| |||||||||||||||||| ||| ||||| ||||||||||    
T  7167523 gagcaatgctatatttctaaaaaaataacgtcaagaattcttcaagaataaagaacagtcaatcacaat 7167455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 148 - 250
Target Start/End: Original strand, 34807936 - 34808038
Alignment:
Q  148 gagcaatgatatatctctagaaaaataacatcaagaattcttcaagaaaaaataacagccaatcacaatgcattatttgccacaattcaaggagatatgg 247  Q
    |||||||  ||||||||| |||||||||||||||||||||||||| || ||| | ||| ||||||||||| | |||||  || |||| |||||| | |||    
T  34807936 gagcaattttatatctctcgaaaaataacatcaagaattcttcaaaaataaagagcagtcaatcacaatgtactatttatcataatttaaggaggtgtgg 34808035  T
Q  248 ctg 250  Q
    |||    
T  34808036 ctg 34808038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 152 - 236
Target Start/End: Original strand, 45010204 - 45010288
Alignment:
Q  152 aatgatatatctctagaaaaataacatcaagaattcttcaagaaaaaataacagccaatcacaatgcattatttgccacaattca 236  Q
    |||| |||||||||| ||| |||||||||||||||||| ||||| ||| | || ||||  | ||||||||||||| |||||||||    
T  45010204 aatgctatatctctaaaaagataacatcaagaattctttaagaataaagagcatccaaatataatgcattatttgtcacaattca 45010288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 207 - 250
Target Start/End: Complemental strand, 44714948 - 44714905
Alignment:
Q  207 caatcacaatgcattatttgccacaattcaaggagatatggctg 250  Q
    ||||||||||||||||||||||||||||||| ||||| ||||||    
T  44714948 caatcacaatgcattatttgccacaattcaacgagatgtggctg 44714905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 148 - 241
Target Start/End: Original strand, 47550791 - 47550884
Alignment:
Q  148 gagcaatgatatatctctagaaaaataacatcaagaattcttcaagaaaaaataacagccaatcacaatgcattatttgccacaattcaaggag 241  Q
    ||||||||  ||||||||| ||||||||||| || ||   |||||||| ||| | |||| ||| |||||||| |||||||||||||| ||||||    
T  47550791 gagcaatgcaatatctctataaaaataacattaaaaaaatttcaagaataaagagcagcaaattacaatgcactatttgccacaatttaaggag 47550884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 148 - 240
Target Start/End: Original strand, 50663730 - 50663823
Alignment:
Q  148 gagcaatgatatatctctagaaaa-ataacatcaagaattcttcaagaaaaaataacagccaatcacaatgcattatttgccacaattcaagga 240  Q
    |||||||| |||||||||| |||| |||||||||| |||| | |||||| ||| | |||  ||| | |||||||||||| ||||||||||||||    
T  50663730 gagcaatgctatatctctaaaaaaaataacatcaaaaattttacaagaataaagagcagtgaatgataatgcattatttaccacaattcaagga 50663823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 148 - 184
Target Start/End: Complemental strand, 2958869 - 2958833
Alignment:
Q  148 gagcaatgatatatctctagaaaaataacatcaagaa 184  Q
    |||||||| ||||||||||||||||||||||||||||    
T  2958869 gagcaatgctatatctctagaaaaataacatcaagaa 2958833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 332
Target Start/End: Original strand, 4624503 - 4624536
Alignment:
Q  299 tcttaatgctatttttctagagaaatagcatttt 332  Q
    |||| |||||||||||||||||||||||||||||    
T  4624503 tcttgatgctatttttctagagaaatagcatttt 4624536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 332
Target Start/End: Original strand, 16255019 - 16255052
Alignment:
Q  299 tcttaatgctatttttctagagaaatagcatttt 332  Q
    |||| |||||||||||||||||||||||||||||    
T  16255019 tcttgatgctatttttctagagaaatagcatttt 16255052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 206 - 250
Target Start/End: Complemental strand, 2958832 - 2958788
Alignment:
Q  206 ccaatcacaatgcattatttgccacaattcaaggagatatggctg 250  Q
    |||||||||||||| ||||||||| ||||||||||| | ||||||    
T  2958832 ccaatcacaatgcactatttgccaaaattcaaggaggtgtggctg 2958788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 331
Target Start/End: Original strand, 41647392 - 41647424
Alignment:
Q  299 tcttaatgctatttttctagagaaatagcattt 331  Q
    |||| ||||||||||||||||||||||||||||    
T  41647392 tcttgatgctatttttctagagaaatagcattt 41647424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 152 - 196
Target Start/End: Complemental strand, 47550987 - 47550943
Alignment:
Q  152 aatgatatatctctagaaaaataacatcaagaattcttcaagaaa 196  Q
    |||| ||| |||||||||||||| ||||||||||| |||||||||    
T  47550987 aatgttatttctctagaaaaatagcatcaagaatttttcaagaaa 47550943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 75; Significance: 2e-34; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 147 - 241
Target Start/End: Original strand, 31788304 - 31788398
Alignment:
Q  147 cgagcaatgatatatctctagaaaaataacatcaagaattcttcaagaaaaaataacagccaatcacaatgcattatttgccacaattcaaggag 241  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||||| ||||| |||||||||||||||    
T  31788304 cgagcaatgatatatctctagaaaaataacatcaagaattcttcaagaataaagagcagccaatcacaatgcactatttaccacaattcaaggag 31788398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 149 - 241
Target Start/End: Complemental strand, 50613072 - 50612980
Alignment:
Q  149 agcaatgatatatctctagaaaaataacatcaagaattcttcaagaaaaaataacagccaatcacaatgcattatttgccacaattcaaggag 241  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||||| |||||||||||||||||||||    
T  50613072 agcaatgctatatctctagaaaaataacatcaagaattcttcaagaataaagagcagccaatcacaatgcactatttgccacaattcaaggag 50612980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 148 - 241
Target Start/End: Original strand, 45166226 - 45166319
Alignment:
Q  148 gagcaatgatatatctctagaaaaataacatcaagaattcttcaagaaaaaataacagccaatcacaatgcattatttgccacaattcaaggag 241  Q
    |||||||| |||||||||||||||||||||||||||||||||||| || ||| | ||||||||||||||||| |||||||||||||||||||||    
T  45166226 gagcaatgttatatctctagaaaaataacatcaagaattcttcaataataaagagcagccaatcacaatgcactatttgccacaattcaaggag 45166319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 148 - 250
Target Start/End: Complemental strand, 521963 - 521861
Alignment:
Q  148 gagcaatgatatatctctagaaaaataacatcaagaattcttcaagaaaaaataacagccaatcacaatgcattatttgccacaattcaaggagatatgg 247  Q
    |||||||| ||||| |||||| |||||||||||||||||||||||||| ||| | ||||||||||||||||| ||||||||||||||||||||| | |||    
T  521963 gagcaatgctatatatctagataaataacatcaagaattcttcaagaataaagagcagccaatcacaatgcactatttgccacaattcaaggaggtgtgg 521864  T
Q  248 ctg 250  Q
    |||    
T  521863 ctg 521861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 148 - 250
Target Start/End: Complemental strand, 1561454 - 1561352
Alignment:
Q  148 gagcaatgatatatctctagaaaaataacatcaagaattcttcaagaaaaaataacagccaatcacaatgcattatttgccacaattcaaggagatatgg 247  Q
    ||||| || ||||||||||||||||||||||||||||||||||||||| ||| | || |||||||||||||| ||||||||||||||||||||| | |||    
T  1561454 gagcagtgttatatctctagaaaaataacatcaagaattcttcaagaataaagagcaaccaatcacaatgcactatttgccacaattcaaggaggtgtgg 1561355  T
Q  248 ctg 250  Q
    |||    
T  1561354 ctg 1561352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 148 - 241
Target Start/End: Complemental strand, 23643178 - 23643085
Alignment:
Q  148 gagcaatgatatatctctagaaaaataacatcaagaattcttcaagaaaaaataacagccaatcacaatgcattatttgccacaattcaaggag 241  Q
    |||||||| | ||||||||||||||||||||||||||||||||||||| |||||  || ||||||||||||| |||||||||||||||||||||    
T  23643178 gagcaatgttgtatctctagaaaaataacatcaagaattcttcaagaataaatattagtcaatcacaatgcactatttgccacaattcaaggag 23643085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 148 - 250
Target Start/End: Complemental strand, 38176588 - 38176486
Alignment:
Q  148 gagcaatgatatatctctagaaaaataacatcaagaattcttcaagaaaaaataacagccaatcacaatgcattatttgccacaattcaaggagatatgg 247  Q
    |||||||| |||||||||||||||||| |||||||||||||||||||| ||| | ||||||||| ||||||| |||||||| |||||||||||| | |||    
T  38176588 gagcaatgttatatctctagaaaaatatcatcaagaattcttcaagaataaagagcagccaatcgcaatgcactatttgcctcaattcaaggaggtgtgg 38176489  T
Q  248 ctg 250  Q
    |||    
T  38176488 ctg 38176486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 148 - 241
Target Start/End: Original strand, 36517514 - 36517607
Alignment:
Q  148 gagcaatgatatatctctagaaaaataacatcaagaattcttcaagaaaaaataacagccaatcacaatgcattatttgccacaattcaaggag 241  Q
    |||||||| ||||| |||||| |||||||||||||||||||||||||| ||| | ||| ||||||||||||| |||||||||||||||||||||    
T  36517514 gagcaatgctatatatctagacaaataacatcaagaattcttcaagaataaagagcagtcaatcacaatgcactatttgccacaattcaaggag 36517607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 148 - 234
Target Start/End: Complemental strand, 34624674 - 34624589
Alignment:
Q  148 gagcaatgatatatctctagaaaaataacatcaagaattcttcaagaaaaaataacagccaatcacaatgcattatttgccacaatt 234  Q
    |||||||| |||||||||||||||||||||| |||||||||||||||| ||| | ||||||||||||||||| ||||| ||||||||    
T  34624674 gagcaatgctatatctctagaaaaataacat-aagaattcttcaagaataaagagcagccaatcacaatgcactatttaccacaatt 34624589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 151 - 246
Target Start/End: Original strand, 39145254 - 39145349
Alignment:
Q  151 caatgatatatctctagaaaaataacatcaagaattcttcaagaaaaaataacagccaatcacaatgcattatttgccacaattcaaggagatatg 246  Q
    ||||| ||||||||||||||||||| ||||||||||||| ||||| ||| | |||||||| |||||||| ||||||| ||||||||| ||| ||||    
T  39145254 caatgctatatctctagaaaaataatatcaagaattctttaagaataaaaagcagccaattacaatgcactatttgctacaattcaatgaggtatg 39145349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 152 - 237
Target Start/End: Complemental strand, 51297219 - 51297135
Alignment:
Q  152 aatgatatatctctagaaaaataacatcaagaattcttcaagaaaaaataacagccaatcacaatgcattatttgccacaattcaa 237  Q
    |||| ||||||||||||||||||||||||||| | ||||||| | ||| ||||||||| ||||||||| |||||||||||||||||    
T  51297219 aatgttatatctctagaaaaataacatcaagagt-cttcaagcataaagaacagccaaccacaatgcactatttgccacaattcaa 51297135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 152 - 237
Target Start/End: Original strand, 52546746 - 52546831
Alignment:
Q  152 aatgatatatctctagaaaaataacatcaagaattcttcaagaaaaaataacagccaatcacaatgcattatttgccacaattcaa 237  Q
    |||||||||||| ||||||||||||||||| ||||||||||||| ||| | |||||||||||||||   |||||| ||||||||||    
T  52546746 aatgatatatctttagaaaaataacatcaaaaattcttcaagaataaagagcagccaatcacaatgtgctatttgtcacaattcaa 52546831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 148 - 218
Target Start/End: Original strand, 43203248 - 43203318
Alignment:
Q  148 gagcaatgatatatctctagaaaaataacatcaagaattcttcaagaaaaaataacagccaatcacaatgc 218  Q
    |||||||| ||||| |||| ||||||||||||||||||||||||| || ||| | ||||||||||||||||    
T  43203248 gagcaatgctatatttctaaaaaaataacatcaagaattcttcaaaaataaagagcagccaatcacaatgc 43203318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 158 - 241
Target Start/End: Original strand, 20912177 - 20912260
Alignment:
Q  158 atatctctagaaaaataacatcaagaattcttcaagaaaaaataacagccaatcacaatgcattatttgccacaattcaaggag 241  Q
    |||||| || |||||||||||||||||||||||||||| ||| | ||| |||| |||||||| |||||| || |||| ||||||    
T  20912177 atatctttaaaaaaataacatcaagaattcttcaagaataaagagcagtcaataacaatgcactatttgtcataatttaaggag 20912260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 148 - 195
Target Start/End: Original strand, 544634 - 544681
Alignment:
Q  148 gagcaatgatatatctctagaaaaataacatcaagaattcttcaagaa 195  Q
    |||||||  ||||||||||||||||||||| |||||||||||||||||    
T  544634 gagcaatcctatatctctagaaaaataacaccaagaattcttcaagaa 544681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 299 - 339
Target Start/End: Original strand, 45166391 - 45166431
Alignment:
Q  299 tcttaatgctatttttctagagaaatagcatttttcatttt 339  Q
    |||| |||||||||||||||||||||| |||||||||||||    
T  45166391 tcttgatgctatttttctagagaaataacatttttcatttt 45166431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 332
Target Start/End: Complemental strand, 23643013 - 23642980
Alignment:
Q  299 tcttaatgctatttttctagagaaatagcatttt 332  Q
    |||| |||||||||||||||||||||||||||||    
T  23643013 tcttgatgctatttttctagagaaatagcatttt 23642980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 332
Target Start/End: Original strand, 39145416 - 39145449
Alignment:
Q  299 tcttaatgctatttttctagagaaatagcatttt 332  Q
    |||| |||||||||||||||||||||||||||||    
T  39145416 tcttgatgctatttttctagagaaatagcatttt 39145449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 74; Significance: 7e-34; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 148 - 241
Target Start/End: Original strand, 32891174 - 32891267
Alignment:
Q  148 gagcaatgatatatctctagaaaaataacatcaagaattcttcaagaaaaaataacagccaatcacaatgcattatttgccacaattcaaggag 241  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||||| |||||||||||||||||||||    
T  32891174 gagcaatgttatatctctagaaaaataacatcaagaattcttcaagaataaaaagcagccaatcacaatgcactatttgccacaattcaaggag 32891267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 148 - 241
Target Start/End: Original strand, 228023 - 228116
Alignment:
Q  148 gagcaatgatatatctctagaaaaataacatcaagaattcttcaagaaaaaataacagccaatcacaatgcattatttgccacaattcaaggag 241  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||| ||| ||||  ||||||||||||| ||||| |||||||||||||||    
T  228023 gagcaatgatatatctctagaaaaataacatcaagaatttttcaagaataaagaacaatcaatcacaatgcactatttaccacaattcaaggag 228116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 152 - 250
Target Start/End: Complemental strand, 4392040 - 4391942
Alignment:
Q  152 aatgatatatctctagaaaaataacatcaagaattcttcaagaaaaaataacagccaatcacaatgcattatttgccacaattcaaggagatatggctg 250  Q
    |||| ||||||||||||||||||||||||||||||||||||||| ||| | |||||||| |||||||| | ||||||||||||||||||| | ||||||    
T  4392040 aatgttatatctctagaaaaataacatcaagaattcttcaagaataaagagcagccaattacaatgcactgtttgccacaattcaaggagctgtggctg 4391942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 151 - 240
Target Start/End: Original strand, 8692511 - 8692600
Alignment:
Q  151 caatgatatatctctagaaaaataacatcaagaattcttcaagaaaaaataacagccaatcacaatgcattatttgccacaattcaagga 240  Q
    ||||| ||||||||||||||||||||||||||||||||||||||| ||||| || ||||||| |||| | ||||||||||||||||||||    
T  8692511 caatgttatatctctagaaaaataacatcaagaattcttcaagaataaatagcatccaatcataatgtactatttgccacaattcaagga 8692600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 149 - 250
Target Start/End: Complemental strand, 11739417 - 11739316
Alignment:
Q  149 agcaatgatatatctctagaaaaataacatcaagaattcttcaagaaaaaataacagccaatcacaatgcattatttgccacaattcaaggagatatggc 248  Q
    ||||||| ||||||| ||||||||||||||||||||||||||||||| ||| | |||  ||||| |||||| | ||||||||||||||||||| | ||||    
T  11739417 agcaatgttatatctttagaaaaataacatcaagaattcttcaagaataaaaagcaggtaatcataatgcactgtttgccacaattcaaggaggtgtggc 11739318  T
Q  249 tg 250  Q
    ||    
T  11739317 tg 11739316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 148 - 250
Target Start/End: Complemental strand, 41326647 - 41326545
Alignment:
Q  148 gagcaatgatatatctctagaaaaataacatcaagaattcttcaagaaaaaataacagccaatcacaatgcattatttgccacaattcaaggagatatgg 247  Q
    |||||||| |||||||||||||||||||||||| ||  |||||||||| ||| | |||||||||||||||   |||||| |||||||||||||| | |||    
T  41326647 gagcaatgctatatctctagaaaaataacatcacgatctcttcaagaataaagagcagccaatcacaatgtgctatttgacacaattcaaggaggtgtgg 41326548  T
Q  248 ctg 250  Q
    |||    
T  41326547 ctg 41326545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 152 - 241
Target Start/End: Complemental strand, 37094106 - 37094017
Alignment:
Q  152 aatgatatatctctagaaaaataacatcaagaattcttcaagaaaaaataacagccaatcacaatgcattatttgccacaattcaaggag 241  Q
    |||| ||||||||||||||||||||||||| ||||||||||||| ||| | ||| |||||||| || | ||||||| |||||||||||||    
T  37094106 aatgttatatctctagaaaaataacatcaacaattcttcaagaataaagagcagtcaatcacattgtactatttgcaacaattcaaggag 37094017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 148 - 241
Target Start/End: Original strand, 29223465 - 29223556
Alignment:
Q  148 gagcaatgatatatctctagaaaaataacatcaagaattcttcaagaaaaaataacagccaatcacaatgcattatttgccacaattcaaggag 241  Q
    ||||| || ||||||| ||||||||||| |||||||||||||||  ||| || | ||| ||| ||||||||| |||||||||||||||||||||    
T  29223465 gagcagtgctatatctttagaaaaataatatcaagaattcttca--aaataagagcagtcaaccacaatgcactatttgccacaattcaaggag 29223556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 148 - 234
Target Start/End: Original strand, 34286594 - 34286679
Alignment:
Q  148 gagcaatgatatatctctagaaaaataacatcaagaattcttcaagaaaaaataacagccaatcacaatgcattatttgccacaatt 234  Q
    |||||||  |||||||||| |||||||||||||| |||| |||||||| ||| | ||||||||||| ||||| ||||||||||||||    
T  34286594 gagcaatattatatctctaaaaaaataacatcaataattattcaagaataaa-agcagccaatcacgatgcactatttgccacaatt 34286679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 169 - 241
Target Start/End: Original strand, 3456773 - 3456845
Alignment:
Q  169 aaaataacatcaagaattcttcaagaaaaaataacagccaatcacaatgcattatttgccacaattcaaggag 241  Q
    |||||||||| | |||||||||||||| ||| | ||| || |||||||||| |||||||||||||||||||||    
T  3456773 aaaataacattacgaattcttcaagaataaagagcagtcactcacaatgcactatttgccacaattcaaggag 3456845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 148 - 250
Target Start/End: Complemental strand, 38614383 - 38614277
Alignment:
Q  148 gagcaatgatatatctc-tagaaaaataacatcaagaattcttc---aagaaaaaataacagccaatcacaatgcattatttgccacaattcaaggagat 243  Q
    |||||||| |||||||  ||||||||||||||||||||||||||   ||||| ||| | |  |||||||||||||| || ||||||||||||||| ||||    
T  38614383 gagcaatgttatatctaatagaaaaataacatcaagaattcttcttcaagaataaagagcgcccaatcacaatgcactaattgccacaattcaagaagat 38614284  T
Q  244 atggctg 250  Q
     ||||||    
T  38614283 gtggctg 38614277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 148 - 250
Target Start/End: Original strand, 5481358 - 5481454
Alignment:
Q  148 gagcaatgatatatctctagaaaaataacatcaagaattcttcaagaaaaaataacagccaatcacaatgcattatttgccacaattcaaggagatatgg 247  Q
    |||||||| |||||| |||||||||||| ||||| ||||||| ||||| |||      ||| |||||||||||||||||||||||||||  ||||| |||    
T  5481358 gagcaatgctatatcactagaaaaataatatcaaaaattctttaagaataaa------ccattcacaatgcattatttgccacaattcatagagatgtgg 5481451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 157 - 243
Target Start/End: Original strand, 28434210 - 28434296
Alignment:
Q  157 tatatctctagaaaaataacatcaagaattcttcaagaaaaaataacagccaatcacaatgcattatttgccacaattcaaggagat 243  Q
    ||||||||||||||||||||||  ||||||||| || || ||| | |||||||| |||||||| ||||| |||||||| ||| ||||    
T  28434210 tatatctctagaaaaataacattgagaattctttaaaaataaagagcagccaattacaatgcactatttaccacaatttaagaagat 28434296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 168 - 225
Target Start/End: Original strand, 31644658 - 31644715
Alignment:
Q  168 aaaaataacatcaagaattcttcaagaaaaaataacagccaatcacaatgcattattt 225  Q
    |||||||||||||| ||||||||||||| ||| | ||||||||||||||||| |||||    
T  31644658 aaaaataacatcaataattcttcaagaataaagagcagccaatcacaatgcactattt 31644715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 152 - 225
Target Start/End: Complemental strand, 35672504 - 35672431
Alignment:
Q  152 aatgatatatctctagaaaaataacatcaagaattcttcaagaaaaaataacagccaatcacaatgcattattt 225  Q
    |||| ||||| |||||||||||||||| ||||||| |||||||| ||| | ||| ||||||||||||| |||||    
T  35672504 aatgttatatttctagaaaaataacattaagaatttttcaagaataaagagcagtcaatcacaatgcactattt 35672431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 185
Target Start/End: Original strand, 42148869 - 42148906
Alignment:
Q  148 gagcaatgatatatctctagaaaaataacatcaagaat 185  Q
    |||||||| ||||||||||||||||||| |||||||||    
T  42148869 gagcaatgttatatctctagaaaaataatatcaagaat 42148906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 152 - 192
Target Start/End: Original strand, 43141523 - 43141563
Alignment:
Q  152 aatgatatatctctagaaaaataacatcaagaattcttcaa 192  Q
    |||| ||| |||||||||||||| |||||||||||||||||    
T  43141523 aatgttatttctctagaaaaatagcatcaagaattcttcaa 43141563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 70; Significance: 2e-31; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 148 - 249
Target Start/End: Original strand, 17611842 - 17611943
Alignment:
Q  148 gagcaatgatatatctctagaaaaataacatcaagaattcttcaagaaaaaataacagccaatcacaatgcattatttgccacaattcaaggagatatgg 247  Q
    |||||||| |||||| |||||||||||||||||||||||||||||||| ||| |||| ||||||| |||| ||||||||||||||||||||||||| |||    
T  17611842 gagcaatgctatatcgctagaaaaataacatcaagaattcttcaagaataaagaacaaccaatcataatgaattatttgccacaattcaaggagatgtgg 17611941  T
Q  248 ct 249  Q
    ||    
T  17611942 ct 17611943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 151 - 241
Target Start/End: Complemental strand, 27425949 - 27425859
Alignment:
Q  151 caatgatatatctctagaaaaataacatcaagaattcttcaagaaaaaataacagccaatcacaatgcattatttgccacaattcaaggag 241  Q
    ||||| ||||||| ||||||||||||||||||||||||| ||||| ||| ||||| |||||||||||||||||||||||||||||||||||    
T  27425949 caatgctatatctttagaaaaataacatcaagaattcttaaagaataaagaacagtcaatcacaatgcattatttgccacaattcaaggag 27425859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 148 - 250
Target Start/End: Complemental strand, 23992149 - 23992047
Alignment:
Q  148 gagcaatgatatatctctagaaaaataacatcaagaattcttcaagaaaaaataacagccaatcacaatgcattatttgccacaattcaaggagatatgg 247  Q
    |||||||| |||||||||| ||| |||||||||||||||||||||||| ||| | ||||| ||||||||||| ||||||||||||||||||||| | |||    
T  23992149 gagcaatgttatatctctacaaatataacatcaagaattcttcaagaataaagagcagcctatcacaatgcactatttgccacaattcaaggaggtgtgg 23992050  T
Q  248 ctg 250  Q
    |||    
T  23992049 ctg 23992047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 145 - 241
Target Start/End: Original strand, 22326855 - 22326951
Alignment:
Q  145 tccgagcaatgatatatctctagaaaaataacatcaagaattcttcaagaaaaaataacagccaatcacaatgcattatttgccacaattcaaggag 241  Q
    |||||||| || ||||||| ||||||||||||||||||||||||||||||| ||| | | | ||||||||||| | |||||||||||||||| ||||    
T  22326855 tccgagcagtgctatatctttagaaaaataacatcaagaattcttcaagaagaaagagccgtcaatcacaatgtactatttgccacaattcagggag 22326951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 148 - 239
Target Start/End: Original strand, 8307525 - 8307616
Alignment:
Q  148 gagcaatgatatatctctagaaaaataacatcaagaattcttcaagaaaaaataacagccaatcacaatgcattatttgccacaattcaagg 239  Q
    |||||||| | ||| |||||||||||||||||||||||| || ||||| ||| |  || |||||| |||||| |||| ||||||||||||||    
T  8307525 gagcaatgctgtatatctagaaaaataacatcaagaattttttaagaataaagacgagtcaatcataatgcactattagccacaattcaagg 8307616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 148 - 192
Target Start/End: Original strand, 19479441 - 19479485
Alignment:
Q  148 gagcaatgatatatctctagaaaaataacatcaagaattcttcaa 192  Q
    |||||||| ||||||||||||||||||||||||| ||||||||||    
T  19479441 gagcaatgctatatctctagaaaaataacatcaaaaattcttcaa 19479485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 149 - 247
Target Start/End: Complemental strand, 41405912 - 41405814
Alignment:
Q  149 agcaatgatatatctctagaaaaataacatcaagaattcttcaagaaaaaataacagccaatcacaatgcattatttgccacaattcaaggagatatgg 247  Q
    |||| ||||||||||||||||||  || |||| ||  |||||||||| ||| |  || |  |||||||||| ||||||||||||| ||||||| |||||    
T  41405912 agcattgatatatctctagaaaaggaatatcacgatctcttcaagaataaagaggagtcggtcacaatgcactatttgccacaatacaaggaggtatgg 41405814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 69; Significance: 7e-31; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 148 - 236
Target Start/End: Original strand, 24683076 - 24683164
Alignment:
Q  148 gagcaatgatatatctctagaaaaataacatcaagaattcttcaagaaaaaataacagccaatcacaatgcattatttgccacaattca 236  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||||| ||||||||||||||||    
T  24683076 gagcaatgctatatctctagaaaaataacatcaagaattcttcaagaataaagagcagccaatcacaatgcactatttgccacaattca 24683164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 148 - 250
Target Start/End: Original strand, 41633217 - 41633319
Alignment:
Q  148 gagcaatgatatatctctagaaaaataacatcaagaattcttcaagaaaaaataacagccaatcacaatgcattatttgccacaattcaaggagatatgg 247  Q
    |||||||| |||||||||||||||||||||| |||||||||||||||| ||| | ||||||||||||||||| || |||||||||||||||||| | |||    
T  41633217 gagcaatgttatatctctagaaaaataacattaagaattcttcaagaataaagagcagccaatcacaatgcactacttgccacaattcaaggaggtgtgg 41633316  T
Q  248 ctg 250  Q
    |||    
T  41633317 ctg 41633319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 148 - 250
Target Start/End: Complemental strand, 18375589 - 18375487
Alignment:
Q  148 gagcaatgatatatctctagaaaaataacatcaagaattcttcaagaaaaaataacagccaatcacaatgcattatttgccacaattcaaggagatatgg 247  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||| |||   | | ||||||||||||| ||||||||||||||||||||| | |||    
T  18375589 gagcaatgttatatctctagaaaaataacatcaagaattcttcaagaataaagtgcggtcaatcacaatgcactatttgccacaattcaaggaggtgtgg 18375490  T
Q  248 ctg 250  Q
    |||    
T  18375489 ctg 18375487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 148 - 250
Target Start/End: Complemental strand, 26179409 - 26179307
Alignment:
Q  148 gagcaatgatatatctctagaaaaataacatcaagaattcttcaagaaaaaataacagccaatcacaatgcattatttgccacaattcaaggagatatgg 247  Q
    |||||||| |||||||||||||||||||||| |||||||||||||||| ||| | |||||||||||| |||| |||||  |||||||||||||| | |||    
T  26179409 gagcaatgttatatctctagaaaaataacattaagaattcttcaagaataaagagcagccaatcacagtgcactatttaacacaattcaaggaggtgtgg 26179310  T
Q  248 ctg 250  Q
    |||    
T  26179309 ctg 26179307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 148 - 231
Target Start/End: Complemental strand, 47281735 - 47281652
Alignment:
Q  148 gagcaatgatatatctctagaaaaataacatcaagaattcttcaagaaaaaataacagccaatcacaatgcattatttgccaca 231  Q
    |||||||| ||||| ||||||||||||||||||||||||||||||||| ||| |||  | |||||||||||| |||||||||||    
T  47281735 gagcaatgttatatgtctagaaaaataacatcaagaattcttcaagaataaagaacgacaaatcacaatgcactatttgccaca 47281652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 148 - 233
Target Start/End: Original strand, 41878321 - 41878406
Alignment:
Q  148 gagcaatgatatatctctagaaaaataacatcaagaattcttcaagaaaaaataacagccaatcacaatgcattatttgccacaat 233  Q
    |||||||| | ||||| |||||||||||||||| |||||||||| ||| ||| | ||||||||||||||||| ||||||| |||||    
T  41878321 gagcaatgttgtatctatagaaaaataacatcatgaattcttcatgaataaagatcagccaatcacaatgcactatttgctacaat 41878406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 148 - 195
Target Start/End: Complemental strand, 4098580 - 4098533
Alignment:
Q  148 gagcaatgatatatctctagaaaaataacatcaagaattcttcaagaa 195  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||    
T  4098580 gagcaatgttatatctctagaaaaataacatcaagaattcttcaagaa 4098533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 162 - 250
Target Start/End: Complemental strand, 37674185 - 37674097
Alignment:
Q  162 ctctagaaaaataacatcaagaattcttcaagaaaaaataacagccaatcacaatgcattatttgccacaattcaaggagatatggctg 250  Q
    |||||||||||||||||||||||||||||||||  ||| | ||| ||||||||||| | ||||| | ||||||||| ||| | ||||||    
T  37674185 ctctagaaaaataacatcaagaattcttcaagactaaagagcagtcaatcacaatgtactatttactacaattcaaagaggtgtggctg 37674097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 147 - 219
Target Start/End: Complemental strand, 17847737 - 17847665
Alignment:
Q  147 cgagcaatgatatatctctagaaaaataacatcaagaattcttcaagaaaaaataacagccaatcacaatgca 219  Q
    ||||||||| |||||||||||||||||||||| || ||||||||||||  ||| | ||| |||||| ||||||    
T  17847737 cgagcaatgctatatctctagaaaaataacataaaaaattcttcaagattaaaaagcagtcaatcataatgca 17847665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 148 - 250
Target Start/End: Complemental strand, 23348316 - 23348213
Alignment:
Q  148 gagcaatgatatatctctagaaaaa-taacatcaagaattcttcaagaaaaaataacagccaatcacaatgcattatttgccacaattcaaggagatatg 246  Q
    |||||||| ||||||| || ||||| ||||||||| ||||||| ||||| ||| ||||  |||||||||| || ||||| ||| ||||||||||| | ||    
T  23348316 gagcaatgctatatctttaaaaaaaataacatcaataattctttaagaataaagaacactcaatcacaatacactatttaccataattcaaggaggtgtg 23348217  T
Q  247 gctg 250  Q
    ||||    
T  23348216 gctg 23348213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 299 - 334
Target Start/End: Original strand, 47282226 - 47282261
Alignment:
Q  299 tcttaatgctatttttctagagaaatagcatttttc 334  Q
    |||| |||||||||||||||||||||||||||||||    
T  47282226 tcttgatgctatttttctagagaaatagcatttttc 47282261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 152 - 194
Target Start/End: Original strand, 37674003 - 37674045
Alignment:
Q  152 aatgatatatctctagaaaaataacatcaagaattcttcaaga 194  Q
    |||||||| |||||||||||||| ||||||||||| |||||||    
T  37674003 aatgatatttctctagaaaaatagcatcaagaatttttcaaga 37674045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 332
Target Start/End: Original strand, 41633381 - 41633414
Alignment:
Q  299 tcttaatgctatttttctagagaaatagcatttt 332  Q
    |||| |||||||||||||||||||||||||||||    
T  41633381 tcttgatgctatttttctagagaaatagcatttt 41633414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 185
Target Start/End: Complemental strand, 47839130 - 47839093
Alignment:
Q  148 gagcaatgatatatctctagaaaaataacatcaagaat 185  Q
    |||||||| |||||||||||||||||||| ||||||||    
T  47839130 gagcaatgctatatctctagaaaaataacttcaagaat 47839093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 332
Target Start/End: Original strand, 52726037 - 52726070
Alignment:
Q  299 tcttaatgctatttttctagagaaatagcatttt 332  Q
    |||| |||||||||||||||||||||||||||||    
T  52726037 tcttgatgctatttttctagagaaatagcatttt 52726070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 304 - 332
Target Start/End: Complemental strand, 23348142 - 23348114
Alignment:
Q  304 atgctatttttctagagaaatagcatttt 332  Q
    |||||||||||||||||||||||||||||    
T  23348142 atgctatttttctagagaaatagcatttt 23348114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 203 - 239
Target Start/End: Original strand, 54358167 - 54358203
Alignment:
Q  203 cagccaatcacaatgcattatttgccacaattcaagg 239  Q
    ||||||||||||||||| |||||||||||||| ||||    
T  54358167 cagccaatcacaatgcactatttgccacaatttaagg 54358203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 151 - 250
Target Start/End: Original strand, 492669 - 492768
Alignment:
Q  151 caatgatatatctctagaaaaataacatcaagaattcttcaagaaaaaataacagccaatcacaatgcattatttgccacaattcaaggagatatggctg 250  Q
    ||||| ||||||||||||||||||||||||||||||||||||||| ||| | |||||||||||||||||  ||||| |||||||||||||| | ||||||    
T  492669 caatgttatatctctagaaaaataacatcaagaattcttcaagaataaagagcagccaatcacaatgcacaatttgtcacaattcaaggaggtgtggctg 492768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 2e-25; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 148 - 243
Target Start/End: Original strand, 8551489 - 8551584
Alignment:
Q  148 gagcaatgatatatctctagaaaaataacatcaagaattcttcaagaaaaaataacagccaatcacaatgcattatttgccacaattcaaggagat 243  Q
    |||||||| |||||||||| ||||||||||| ||||||||||| |||| ||| |||| |||||||||||||||| |||||||||||| ||||||||    
T  8551489 gagcaatgctatatctctaaaaaaataacattaagaattcttcgagaataaagaacaaccaatcacaatgcattgtttgccacaattaaaggagat 8551584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 158 - 241
Target Start/End: Original strand, 39112658 - 39112741
Alignment:
Q  158 atatctctagaaaaataacatcaagaattcttcaagaaaaaataacagccaatcacaatgcattatttgccacaattcaaggag 241  Q
    ||||||||||||||||||||||||||||||||||| || ||| | || |||||||||||||| ||||||||| |||||||||||    
T  39112658 atatctctagaaaaataacatcaagaattcttcaaaaataaagagcaaccaatcacaatgcactatttgccataattcaaggag 39112741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 156 - 241
Target Start/End: Original strand, 29314007 - 29314092
Alignment:
Q  156 atatatctctagaaaaataacatcaagaattcttcaagaaaaaataacagccaatcacaatgcattatttgccacaattcaaggag 241  Q
    ||||||||||||||||||||||||||||||| || ||||| ||| |  || ||||||||||||| |||||||||||||| ||||||    
T  29314007 atatatctctagaaaaataacatcaagaattgtttaagaataaagagaagtcaatcacaatgcactatttgccacaatttaaggag 29314092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 148 - 241
Target Start/End: Original strand, 41322529 - 41322622
Alignment:
Q  148 gagcaatgatatatctctagaaaaataacatcaagaattcttcaagaaaaaataacagccaatcacaatgcattatttgccacaattcaaggag 241  Q
    |||||||| ||||||| || |||||||||||||||||||||||||||| ||| | ||| ||||||||||||| ||||||  | |||||||||||    
T  41322529 gagcaatgctatatctttaaaaaaataacatcaagaattcttcaagaataaagagcagtcaatcacaatgcactatttgtgaaaattcaaggag 41322622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 148 - 240
Target Start/End: Original strand, 4851733 - 4851825
Alignment:
Q  148 gagcaatgatatatctctagaaaaataacatcaagaattcttcaagaaaaaataacagccaatcacaatgcattatttgccacaattcaagga 240  Q
    |||||||| |||||||||||||||||||||||||||||| || ||||| ||| | ||| |||||| |||||| ||||| |||||||| |||||    
T  4851733 gagcaatgctatatctctagaaaaataacatcaagaattttttaagaataaagagcagtcaatcataatgcactattttccacaatttaagga 4851825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 148 - 250
Target Start/End: Complemental strand, 15562113 - 15562011
Alignment:
Q  148 gagcaatgatatatctctagaaaaataacatcaagaattcttcaagaaaaaataacagccaatcacaatgcattatttgccacaattcaaggagatatgg 247  Q
    |||||||  |||||||| |||||||||||||||| ||   || ||||| ||||||||| |||||  |||||||||||||||||||||||||||| | |||    
T  15562113 gagcaattctatatctcaagaaaaataacatcaaaaaaattttaagaataaataacagtcaatcgtaatgcattatttgccacaattcaaggaggtgtgg 15562014  T
Q  248 ctg 250  Q
    |||    
T  15562013 ctg 15562011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 152 - 234
Target Start/End: Original strand, 34392112 - 34392194
Alignment:
Q  152 aatgatatatctctagaaaaataacatcaagaattcttcaagaaaaaataacagccaatcacaatgcattatttgccacaatt 234  Q
    |||| |||||||||| ||||||||||||||||||| |||||||| ||| | ||  ||||||||||| | ||||||||||||||    
T  34392112 aatgctatatctctaaaaaaataacatcaagaatttttcaagaataaagagcactcaatcacaatgtactatttgccacaatt 34392194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 148 - 194
Target Start/End: Original strand, 1196507 - 1196553
Alignment:
Q  148 gagcaatgatatatctctagaaaaataacatcaagaattcttcaaga 194  Q
    |||||||| ||||||||||||||||||||||||||||||||| ||||    
T  1196507 gagcaatgctatatctctagaaaaataacatcaagaattctttaaga 1196553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 177 - 243
Target Start/End: Complemental strand, 37919709 - 37919643
Alignment:
Q  177 atcaagaattcttcaagaaaaaataacagccaatcacaatgcattatttgccacaattcaaggagat 243  Q
    |||||||||| || ||||| ||||||||  |||||||||||||||||||| ||||||| ||||||||    
T  37919709 atcaagaattttttaagaataaataacaatcaatcacaatgcattatttgtcacaatttaaggagat 37919643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 170 - 250
Target Start/End: Complemental strand, 36473226 - 36473146
Alignment:
Q  170 aaataacatcaagaattcttcaagaaaaaataacagccaatcacaatgcattatttgccacaattcaaggagatatggctg 250  Q
    |||||||||||||||||||||||||| ||| | ||| |||||||| | || |||||| ||||||| |||||| | ||||||    
T  36473226 aaataacatcaagaattcttcaagaataaagagcagtcaatcacagtacactatttgacacaatttaaggaggtgtggctg 36473146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 186 - 233
Target Start/End: Original strand, 4794159 - 4794206
Alignment:
Q  186 tcttcaagaaaaaataacagccaatcacaatgcattatttgccacaat 233  Q
    |||||||||| ||||| ||||||||||||||||| |||||||||||||    
T  4794159 tcttcaagaataaatagcagccaatcacaatgcactatttgccacaat 4794206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 299 - 332
Target Start/End: Original strand, 4824307 - 4824340
Alignment:
Q  299 tcttaatgctatttttctagagaaatagcatttt 332  Q
    ||||||||||||||||||||||||||||||||||    
T  4824307 tcttaatgctatttttctagagaaatagcatttt 4824340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 167 - 240
Target Start/End: Complemental strand, 11653894 - 11653817
Alignment:
Q  167 gaaaaataacatcaagaattcttcaagaaaaaataacag----ccaatcacaatgcattatttgccacaattcaagga 240  Q
    ||||||||||||||||||||||||||||| ||| | |||     |||||| |||| | ||||||||||||||||||||    
T  11653894 gaaaaataacatcaagaattcttcaagaataaagagcagtcaatcaatcataatgtactatttgccacaattcaagga 11653817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 152 - 194
Target Start/End: Original strand, 36473052 - 36473094
Alignment:
Q  152 aatgatatatctctagaaaaataacatcaagaattcttcaaga 194  Q
    |||| ||| |||||||||||||||||||||||||| |||||||    
T  36473052 aatgctatttctctagaaaaataacatcaagaatttttcaaga 36473094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 304 - 341
Target Start/End: Complemental strand, 1416078 - 1416041
Alignment:
Q  304 atgctatttttctagagaaatagcatttttcattttca 341  Q
    |||||||||||||||||||||| |||||| ||||||||    
T  1416078 atgctatttttctagagaaataacattttccattttca 1416041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 181
Target Start/End: Original strand, 3607036 - 3607069
Alignment:
Q  148 gagcaatgatatatctctagaaaaataacatcaa 181  Q
    |||||||| |||||||||||||||||||||||||    
T  3607036 gagcaatgctatatctctagaaaaataacatcaa 3607069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 185
Target Start/End: Original strand, 11643302 - 11643331
Alignment:
Q  156 atatatctctagaaaaataacatcaagaat 185  Q
    ||||||||||||||||||||||||||||||    
T  11643302 atatatctctagaaaaataacatcaagaat 11643331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 225
Target Start/End: Original strand, 33888885 - 33888942
Alignment:
Q  168 aaaaataacatcaagaattcttcaagaaaaaataacagccaatcacaatgcattattt 225  Q
    ||||||||||| || ||||||| ||||| ||| ||||  |||||||||||||||||||    
T  33888885 aaaaataacattaaaaattctttaagaataaagaacactcaatcacaatgcattattt 33888942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 332
Target Start/End: Original strand, 33889013 - 33889046
Alignment:
Q  299 tcttaatgctatttttctagagaaatagcatttt 332  Q
    |||| |||||||||||||||||||||||||||||    
T  33889013 tcttgatgctatttttctagagaaatagcatttt 33889046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 332
Target Start/End: Original strand, 41322694 - 41322727
Alignment:
Q  299 tcttaatgctatttttctagagaaatagcatttt 332  Q
    |||| |||||||||||||||||||||||||||||    
T  41322694 tcttgatgctatttttctagagaaatagcatttt 41322727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 152 - 196
Target Start/End: Complemental strand, 33889044 - 33889000
Alignment:
Q  152 aatgatatatctctagaaaaataacatcaagaattcttcaagaaa 196  Q
    |||| ||| |||||||||||||| ||||||||||| |||||||||    
T  33889044 aatgctatttctctagaaaaatagcatcaagaatttttcaagaaa 33889000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 60; Significance: 2e-25; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 157 - 240
Target Start/End: Complemental strand, 7646964 - 7646881
Alignment:
Q  157 tatatctctagaaaaataacatcaagaattcttcaagaaaaaataacagccaatcacaatgcattatttgccacaattcaagga 240  Q
    ||||||||||||||||||||||||||||||||| || || ||| | ||||||||||||||||| ||||||||||||||||||||    
T  7646964 tatatctctagaaaaataacatcaagaattctttaaaaataaagagcagccaatcacaatgcactatttgccacaattcaagga 7646881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 148 - 227
Target Start/End: Original strand, 17366850 - 17366929
Alignment:
Q  148 gagcaatgatatatctctagaaaaataacatcaagaattcttcaagaaaaaataacagccaatcacaatgcattatttgc 227  Q
    |||||||| |||||||||||||||| ||||| ||||||| |||||||| ||| |||||| ||||||| |||| |||||||    
T  17366850 gagcaatgctatatctctagaaaaacaacattaagaatttttcaagaataaagaacagctaatcacactgcactatttgc 17366929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 152 - 250
Target Start/End: Original strand, 25935512 - 25935610
Alignment:
Q  152 aatgatatatctctagaaaaataacatcaagaattcttcaagaaaaaataacagccaatcacaatgcattatttgccacaattcaaggagatatggctg 250  Q
    |||| |||||||||||||||||||||| ||||||| |||||||| ||| | || | ||||| |||| | |||||| ||||||| |||||| | ||||||    
T  25935512 aatgttatatctctagaaaaataacattaagaattattcaagaataaagagcatctaatcataatgtactatttgtcacaatttaaggaggtgtggctg 25935610  T

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Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 168 - 241
Target Start/End: Complemental strand, 12607239 - 12607166
Alignment:
Q  168 aaaaataacatcaagaattcttcaagaaaaaataacagccaatcacaatgcattatttgccacaattcaaggag 241  Q
    ||||| || ||||||||||||||||||| ||| | ||| |||||||| |||| |||||||||||||| ||||||    
T  12607239 aaaaaaaaaatcaagaattcttcaagaataaagagcagtcaatcacagtgcactatttgccacaatttaaggag 12607166  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 185
Target Start/End: Original strand, 14017890 - 14017927
Alignment:
Q  148 gagcaatgatatatctctagaaaaataacatcaagaat 185  Q
    ||||||||||||||||||| |||| |||||||||||||    
T  14017890 gagcaatgatatatctctaaaaaattaacatcaagaat 14017927  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 304 - 332
Target Start/End: Original strand, 17366986 - 17367014
Alignment:
Q  304 atgctatttttctagagaaatagcatttt 332  Q
    |||||||||||||||||||||||||||||    
T  17366986 atgctatttttctagagaaatagcatttt 17367014  T

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Target: scaffold0132 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: scaffold0132
Description:

Target: scaffold0132; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 157 - 250
Target Start/End: Original strand, 545 - 637
Alignment:
Q  157 tatatctctagaaaaataacatcaagaattcttcaagaaaaaataacagccaatcacaatgcattatttgccacaattcaaggagatatggctg 250  Q
    ||||||| || |||||||||||||||||||||||||||| ||| | ||| ||||||||||||| |||||| ||||||| |||||| | ||||||    
T  545 tatatctataaaaaaataacatcaagaattcttcaagaataaagagcagtcaatcacaatgcactatttg-cacaatttaaggaggtgtggctg 637  T

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Target: scaffold0132; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 157 - 250
Target Start/End: Original strand, 8505 - 8597
Alignment:
Q  157 tatatctctagaaaaataacatcaagaattcttcaagaaaaaataacagccaatcacaatgcattatttgccacaattcaaggagatatggctg 250  Q
    ||||||| || |||||||||||||||||||||||||||| ||| | ||| ||||||||||||| |||||| ||||||| |||||| | ||||||    
T  8505 tatatctataaaaaaataacatcaagaattcttcaagaataaagagcagtcaatcacaatgcactatttg-cacaatttaaggaggtgtggctg 8597  T

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Target: scaffold0188 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 185
Target Start/End: Complemental strand, 16014 - 15977
Alignment:
Q  148 gagcaatgatatatctctagaaaaataacatcaagaat 185  Q
    |||||||| ||||||| |||||||||||||||||||||    
T  16014 gagcaatgttatatctttagaaaaataacatcaagaat 15977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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