View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13876_high_12 (Length: 449)
Name: NF13876_high_12
Description: NF13876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13876_high_12 |
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Alignment Details
Target: chr4 (Bit Score: 180; Significance: 5e-97; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 17 - 282
Target Start/End: Complemental strand, 51000846 - 51000577
Alignment:
| Q |
17 |
taatttttacaaagaatattcaggatggttcttacgttgttaagttctagtttatccggatgtttttcannnnnnnnnnnnn-----aagtttagagaaa |
111 |
Q |
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| T |
51000846 |
taatttttacaaagaatattcagcatggttcttacgttgttaattgctattttatccagatgtttttcattttttttttttttttttaagtt-agagaaa |
51000748 |
T |
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| Q |
112 |
gtaatagactgagtcttaattcaagcctgaaccttgcaagggtgcaccatgtgttcatgccctttttacatggttatagtgataaataaaataaaaaatc |
211 |
Q |
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| T |
51000747 |
gtaatagactgagtcttaattcaagcctgaaccttgcaaggttgcaccatgtgttcatgccctttttacatggttatagtgataaataaaataaaaaatc |
51000648 |
T |
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| Q |
212 |
aacttaaacatattcttttgaattgcaggcagttcaaggacattgtcctcgtgcattacggagaggtatgc |
282 |
Q |
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| T |
51000647 |
aacttaaacatattcttttgaattgcaggcagttcaaggacattgtcctcgtgcattacggagaggtatgc |
51000577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 329 - 441
Target Start/End: Complemental strand, 51000528 - 51000416
Alignment:
| Q |
329 |
atgcagatgacatgatgctacattggaaccagaattctggttaatcttagtaatatcaagcacaattgtgttgattttctgtgctatctttcttttaagc |
428 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51000528 |
atgcagatgacatgatgctacattggaaccagaattctggttaatcttagtaatatcaagcacaattgtgttgattttctgtgctatctttcttttaagc |
51000429 |
T |
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| Q |
429 |
atggttcctatga |
441 |
Q |
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| T |
51000428 |
atgtttcctatga |
51000416 |
T |
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