View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13876_high_17 (Length: 418)
Name: NF13876_high_17
Description: NF13876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13876_high_17 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 363; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 20 - 406
Target Start/End: Original strand, 3808001 - 3808387
Alignment:
| Q |
20 |
acccttcaacaaagtctccactttctattggatcattttctgagaggatcataacaaagcaaaaatcaaaggtatccatgttgactattgagttattgga |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| || |
|
|
| T |
3808001 |
acccttcaacaaagtctccactttctattggatcattttctgagaggatcataacaaagcaaaaatcaaaggtatctatgttgactattgaattatttga |
3808100 |
T |
|
| Q |
120 |
taagcttccaacattgcattgcccagctgttgatgaggttgtgtgattgagataaggtagatcaacttaataagtttttattctaagttttggtacaatc |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3808101 |
taagcttccaacattgcattgcccagctgttgatgaggttgtgtgattgtgataaggtagatcaacttaataagtttttattctaagttttggtacaatc |
3808200 |
T |
|
| Q |
220 |
aacttaataagttttattcctggtcgttttgaacttggttaatttcatttgttccccttttctttggttaaaactaagtagtgagtgacttgcatatgtc |
319 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
3808201 |
aacttaataagttttattcctgatcgttttgaacttggttaatttcatttgttccccttttctttggttagaactaagtagtgagtgacttgcatatgtc |
3808300 |
T |
|
| Q |
320 |
acaccccacatactttgtatgtaaatcgccaatattttatagagatagatgtgtggaaaattttggttaaagtttataaatagctct |
406 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3808301 |
acaccccacatactttgtatgtaaatcgccaatattttatagagatagatgtgtggaaaattttggttaaagtttataaatagctct |
3808387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 255 - 356
Target Start/End: Original strand, 3776491 - 3776593
Alignment:
| Q |
255 |
tggttaatttcatttgttccccttttcttt--ggttaaaactaagtagtgagtgacttgcatatgtcacaccccacatactttgtatgtaaatcgccaat |
352 |
Q |
| |
|
||||||||||| |||||||| ||||| ||| |||||||| |||| ||||||||||||||| |||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
3776491 |
tggttaatttcttttgttcctcttttttttttggttaaaattaaggagtgagtgacttgcaaatgtcacaccccacatac-ttgtatgtaaatcgccaat |
3776589 |
T |
|
| Q |
353 |
attt |
356 |
Q |
| |
|
|||| |
|
|
| T |
3776590 |
attt |
3776593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 57 - 150
Target Start/End: Original strand, 3776326 - 3776419
Alignment:
| Q |
57 |
ttctgagaggatcataacaaagcaaaaatcaaaggtatccatgttgactattgagttattggataagcttccaacattgcattgcccagctgtt |
150 |
Q |
| |
|
|||||||||||| |||||||||| ||||||||||| ||| |||||||||||||| ||||| || ||||||||||||||||||||| | |||||| |
|
|
| T |
3776326 |
ttctgagaggataataacaaagccaaaatcaaaggcatctatgttgactattgatttattagagaagcttccaacattgcattgcactgctgtt |
3776419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University