View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13876_high_25 (Length: 346)
Name: NF13876_high_25
Description: NF13876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13876_high_25 |
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Alignment Details
Target: chr4 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 16 - 330
Target Start/End: Complemental strand, 43212488 - 43212174
Alignment:
| Q |
16 |
ataaagaagcaagagaaacattccctttaaatttccattaagataattagttgtatctgatacaacctttcaccaaaaattttgatcaatttttcactag |
115 |
Q |
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| T |
43212488 |
ataaagaagcaagagaaacattccctttaaatttccattaagataattagctgtatctgatacaacctttcaccaaaaatcttgatcaatttttcactag |
43212389 |
T |
|
| Q |
116 |
atccatgatagggagagtaatagttacagatgggtatttcaaatcatcaaatgctttagaaatctagaagcaactgaggaagaatactctccaaatgagt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43212388 |
atccatgatagggagagtaatagttacagatgggtatttcaaatcatcaaatgctttagaaatctagaagcaactgaggaagaatactctccaaatgagt |
43212289 |
T |
|
| Q |
216 |
ggcttctatttgaccatcaccctcagtctctgcaatagcaatagcacgctgaacagcctctgcatcaacagaaaggttatgtcaaaaacaacatggcatg |
315 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
43212288 |
ggcttctatttgactatcaccctcagtctctgcaatagcaatagcacgctgaacagcctctgcatcaacagaaaggttatgtcaaaaacaatatggcatg |
43212189 |
T |
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| Q |
316 |
gaatatatgcaaatc |
330 |
Q |
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||||||||||||||| |
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| T |
43212188 |
gaatatatgcaaatc |
43212174 |
T |
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