View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13876_high_27 (Length: 343)
Name: NF13876_high_27
Description: NF13876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13876_high_27 |
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Alignment Details
Target: chr1 (Bit Score: 338; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 1 - 342
Target Start/End: Complemental strand, 50910088 - 50909747
Alignment:
| Q |
1 |
cttgtcatctttctcgccctgaacttcgtaagggaaaggaacctggaagaactggctcctgttccagcaacaattaagtattagccatcccaaagcagta |
100 |
Q |
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| T |
50910088 |
cttgtcatctttctcgccctgaacttcgtaagggaaaggaacctggaagaactggctcctgttccagcaacaattaagtattagccatcccaaagcagta |
50909989 |
T |
|
| Q |
101 |
aagacgcgtctaatagattaatacttgttggaacactatgtttttctaactcttgttccaacaatactacatagatagatgaagtcatcgtattacttga |
200 |
Q |
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| T |
50909988 |
aagacgcgtctaatagattaatacttgttggaacactatgtttttctaactcttgttccaacaatactacatagatagatgaagtcatcgtattacttga |
50909889 |
T |
|
| Q |
201 |
tcctctttttgaattattaccatgcattattgctaaattgtattagagtagccatattttcaaatttactcacactttagcaagaccttgcgtagcgtag |
300 |
Q |
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| T |
50909888 |
tcctctttttgaattattaccatgcattattgctaaattgtattagagtagccatattttcaaatttactcacactttagcaagagcttgcgtagcgtag |
50909789 |
T |
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| Q |
301 |
gtgtacttttgtttatgtctcttttgaattgggttgggttta |
342 |
Q |
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| T |
50909788 |
gtgtacttttgtttatgtctcttttgaattgggttgggttta |
50909747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 34 - 132
Target Start/End: Complemental strand, 50901143 - 50901041
Alignment:
| Q |
34 |
gaaaggaacctggaagaactggctcc-tgttccagcaacaattaagtattagccatcccaaagcagta---aagacgcgtctaatagattaatacttgtt |
129 |
Q |
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| T |
50901143 |
gaaagcaacctggaagaaccggctccctgttccaccaacaattaagtattagccatcccaaagcagtaaagaagacacatctaatagattaatacttggt |
50901044 |
T |
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| Q |
130 |
gga |
132 |
Q |
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||| |
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| T |
50901043 |
gga |
50901041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 172 - 274
Target Start/End: Complemental strand, 43548637 - 43548535
Alignment:
| Q |
172 |
tagatagatgaagtcatcgtattacttgatcctctttttgaattattaccatgcattattgctaaattgtattagagtagccatattttcaaatttactc |
271 |
Q |
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||||||||||||||| | | |||||||||||||||| |||||| || ||||||||||||| | |||||||||||| || ||||||| |||||||||| |
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| T |
43548637 |
tagatagatgaagtcgacttcttacttgatcctctttatgaattgtttccatgcattattgtcagattgtattagaggagtaatattttgaaatttactc |
43548538 |
T |
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| Q |
272 |
aca |
274 |
Q |
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||| |
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| T |
43548537 |
aca |
43548535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 192 - 274
Target Start/End: Complemental strand, 29368852 - 29368771
Alignment:
| Q |
192 |
attacttgatcctctttttgaattattaccatgcattattgctaaattgtattagagtagccatattttcaaatttactcaca |
274 |
Q |
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| T |
29368852 |
attacttcatcctctttttgaagtgttaccatgtattattgtgaaattgtattacagtagccat-ttttaaaatttactcaca |
29368771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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