View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13876_high_28 (Length: 337)
Name: NF13876_high_28
Description: NF13876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13876_high_28 |
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Alignment Details
Target: chr8 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 322
Target Start/End: Complemental strand, 10387745 - 10387423
Alignment:
| Q |
1 |
tcttgtttagatttcttttacatgagagaagatcaatggagaaaatttagtggaattgttatggctgcgcaagggatttatggtataaagatttgaaggg |
100 |
Q |
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| T |
10387745 |
tcttgtttagatttcttttacatgagagaagatcaatggagaaaatttagtggaattgttatggctgcgcaagggatttatggtataaagatttgaaggg |
10387646 |
T |
|
| Q |
101 |
tgtagatgatcaagggaatgatgcatgtaaacctcatattgtatttgtggttttt-catggatgctatatttataaacaaataatgctatattttggata |
199 |
Q |
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| T |
10387645 |
tgtagatgatcaagggaatgatgcatgtaaacctcatattgtatttgtggttttttcatggatgctatatttataaacaaataatgctatattttggata |
10387546 |
T |
|
| Q |
200 |
ttgtaaattcagccaattttagtgtaagaggatttagattgatgcacgttttaccttccaggctccagcaaatttagggggaaacaataagtgatacttt |
299 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
10387545 |
ttgtaaattcagccaattttggtgtaagaggatttagattgatgcactttttaccttccaggctccagcaaatttagggggaaacaataagtaatacttt |
10387446 |
T |
|
| Q |
300 |
tgtacaattttaactaatataat |
322 |
Q |
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||| ||||||||||||||||||| |
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| T |
10387445 |
tgttcaattttaactaatataat |
10387423 |
T |
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