View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13876_high_34 (Length: 264)

Name: NF13876_high_34
Description: NF13876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13876_high_34
NF13876_high_34
[»] chr8 (16 HSPs)
chr8 (18-139)||(2889041-2889162)
chr8 (18-144)||(3160567-3160693)
chr8 (18-144)||(2797633-2797759)
chr8 (156-257)||(2875779-2875880)
chr8 (18-139)||(3145700-3145821)
chr8 (157-257)||(2795851-2795951)
chr8 (156-257)||(3159489-3159590)
chr8 (67-144)||(2847503-2847580)
chr8 (156-257)||(3144908-3145003)
chr8 (18-125)||(2874381-2874488)
chr8 (168-243)||(39188269-39188344)
chr8 (156-205)||(2890311-2890360)
chr8 (181-253)||(4416038-4416111)
chr8 (92-144)||(39187822-39187874)
chr8 (18-72)||(2848722-2848776)
chr8 (100-136)||(4008181-4008217)


Alignment Details
Target: chr8 (Bit Score: 102; Significance: 1e-50; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 18 - 139
Target Start/End: Complemental strand, 2889162 - 2889041
Alignment:
Q  18 tcttgtaatctgagcaacacatcgtgcttgatgaaattcaaagattatgaacgggcaaataaatattttaagggatggctgctgtctcccatcttataga 117  Q
    |||||||||||| |||| ||||||||||||||| |||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  2889162 tcttgtaatctgggcaatacatcgtgcttgatggaattgaaagattatgaacgggcaaataaatattttaaggtatggctgctgtctcccatcttataga 2889063  T
Q  118 aaatcacatctcttgtttaata 139  Q
    ||||||||||||||||||||||    
T  2889062 aaatcacatctcttgtttaata 2889041  T

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Target: chr8; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 18 - 144
Target Start/End: Original strand, 3160567 - 3160693
Alignment:
Q  18 tcttgtaatctgagcaacacatcgtgcttgatgaaattcaaagattatgaacgggcaaataaatattttaagggatggctgctgtctcccatcttataga 117  Q
    |||||||||||||||||  ||||||||||||| ||||| ||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||    
T  3160567 tcttgtaatctgagcaatgcatcgtgcttgataaaattgaaagattatgaacaggcaaataaatattttaaggcatggctgctgtctcccatcttataga 3160666  T
Q  118 aaatcacatctcttgtttaataataat 144  Q
    ||||||||||| |||||||||||||||    
T  3160667 aaatcacatcttttgtttaataataat 3160693  T

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Target: chr8; HSP #3
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 18 - 144
Target Start/End: Original strand, 2797633 - 2797759
Alignment:
Q  18 tcttgtaatctgagcaacacatcgtgcttgatgaaattcaaagattatgaacgggcaaataaatattttaagggatggctgctgtctcccatcttataga 117  Q
    |||||||||||| ||||  |||  |||||||||||||| |||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||    
T  2797633 tcttgtaatctgggcaatgcatgctgcttgatgaaattgaaagattatgaacgggcaaataaatattttaaggtatgtctgctgtctcccatcttataga 2797732  T
Q  118 aaatcacatctcttgtttaataataat 144  Q
    |||||||| ||||||||||||||||||    
T  2797733 aaatcacacctcttgtttaataataat 2797759  T

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Target: chr8; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 156 - 257
Target Start/End: Complemental strand, 2875880 - 2875779
Alignment:
Q  156 agtttatgctgctgaataagccagagcttctaaaagatttcagaaggtaaccaggttacattaatatattttaccatcatccactacaatgtgatagggc 255  Q
    |||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  2875880 agtttatgctgctgaatatgcaagagcttctaaaagatttcagaaggtaaccaggttacattaatatatttcaccatcatccactacaatgtgatagggc 2875781  T
Q  256 ac 257  Q
    ||    
T  2875780 ac 2875779  T

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Target: chr8; HSP #5
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 18 - 139
Target Start/End: Original strand, 3145700 - 3145821
Alignment:
Q  18 tcttgtaatctgagcaacacatcgtgcttgatgaaattcaaagattatgaacgggcaaataaatattttaagggatggctgctgtctcccatcttataga 117  Q
    |||||||||||| ||||  |||  ||||||||| |||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  3145700 tcttgtaatctgggcaatgcatgctgcttgatggaattgaaagattatgaacgggcaaataaatattttaaggtatggctgctgtctcccatcttataga 3145799  T
Q  118 aaatcacatctcttgtttaata 139  Q
    ||||||||||||||||||||||    
T  3145800 aaatcacatctcttgtttaata 3145821  T

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Target: chr8; HSP #6
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 157 - 257
Target Start/End: Original strand, 2795851 - 2795951
Alignment:
Q  157 gtttatgctgctgaataagccagagcttctaaaagatttcagaaggtaaccaggttacattaatatattttaccatcatccactacaatgtgatagggca 256  Q
    ||||||||||||||||| || |||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||    
T  2795851 gtttatgctgctgaatatgcaagagcttctaaaagatatcagaaggtaaccatgttacattaatatatttcaccatcatccactacaatgtgatagggca 2795950  T
Q  257 c 257  Q
    |    
T  2795951 c 2795951  T

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Target: chr8; HSP #7
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 156 - 257
Target Start/End: Original strand, 3159489 - 3159590
Alignment:
Q  156 agtttatgctgctgaataagccagagcttctaaaagatttcagaaggtaaccaggttacattaatatattttaccatcatccactacaatgtgatagggc 255  Q
    |||||||||||||||||| || |||||||| || |||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||    
T  3159489 agtttatgctgctgaatatgcaagagcttccaagagatttcagaaggtaaccaggtaacattaatatatttcaccatcatccactacaatgtgatagggc 3159588  T
Q  256 ac 257  Q
    ||    
T  3159589 ac 3159590  T

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Target: chr8; HSP #8
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 67 - 144
Target Start/End: Complemental strand, 2847580 - 2847503
Alignment:
Q  67 aacgggcaaataaatattttaagggatggctgctgtctcccatcttatagaaaatcacatctcttgtttaataataat 144  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  2847580 aacgggcaaataaatattttaaggcatggctgctgtctcccatcttatagaaaatcacatcttttgtttaataataat 2847503  T

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Target: chr8; HSP #9
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 156 - 257
Target Start/End: Original strand, 3144908 - 3145003
Alignment:
Q  156 agtttatgctgctgaataagccagagcttctaaaagatttcagaaggtaaccaggttacattaatatattttaccatcatccactacaatgtgatagggc 255  Q
    |||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| |||||      |||||||||||||||||    
T  3144908 agtttatgctgctgaatatgcaagagcttctaaaagatttcagaaggtaaccaggttacattaatatatttcaccat------ctacaatgtgatagggc 3145001  T

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Target: chr8; HSP #10
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 18 - 125
Target Start/End: Complemental strand, 2874488 - 2874381
Alignment:
Q  18 tcttgtaatctgagcaacacatcgtgcttgatgaaattcaaagattatgaacgggcaaataaatattttaagggatggctgctgtctcccatcttataga 117  Q
    |||||||||||| ||||  |||||||| ||||| |||| ||||||||||||||| ||||||||||||| |||| ||| ||| ||||||||||||||||||    
T  2874488 tcttgtaatctgggcaatgcatcgtgcctgatggaattgaaagattatgaacggtcaaataaatatttgaaggtatgtctgttgtctcccatcttataga 2874389  T
Q  118 aaatcaca 125  Q
    ||||||||    
T  2874388 aaatcaca 2874381  T

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Target: chr8; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 168 - 243
Target Start/End: Complemental strand, 39188344 - 39188269
Alignment:
Q  168 tgaataagccagagcttctaaaagatttcagaaggtaaccaggttacattaatatattttaccatcatccactaca 243  Q
    |||||| || |||||||||||||||||| |||||||||||| |||||||| |||||||| ||| ||||||||||||    
T  39188344 tgaatatgcaagagcttctaaaagatttgagaaggtaaccaagttacattgatatatttcaccctcatccactaca 39188269  T

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Target: chr8; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 156 - 205
Target Start/End: Complemental strand, 2890360 - 2890311
Alignment:
Q  156 agtttatgctgctgaataagccagagcttctaaaagatttcagaaggtaa 205  Q
    |||||||||||||||||| || ||||||||||||||||||||||||||||    
T  2890360 agtttatgctgctgaatatgcaagagcttctaaaagatttcagaaggtaa 2890311  T

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Target: chr8; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 181 - 253
Target Start/End: Original strand, 4416038 - 4416111
Alignment:
Q  181 gcttctaaaagatttcagaaggtaacc-aggttacattaatatattttaccatcatccactacaatgtgatagg 253  Q
    |||||||||||||||  |||||||||  |||||||||| |||||||| ||| ||||||||||||||||||||||    
T  4416038 gcttctaaaagatttatgaaggtaactgaggttacattgatatatttcaccctcatccactacaatgtgatagg 4416111  T

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Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 144
Target Start/End: Complemental strand, 39187874 - 39187822
Alignment:
Q  92 atggctgctgtctcccatcttatagaaaatcacatctcttgtttaataataat 144  Q
    ||||||||||| || |||||||||||||||||  ||||||||||| |||||||    
T  39187874 atggctgctgtatctcatcttatagaaaatcaattctcttgtttactaataat 39187822  T

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Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 2848776 - 2848722
Alignment:
Q  18 tcttgtaatctgagcaacacatcgtgcttgatgaaattcaaagattatgaacggg 72  Q
    |||||||||||| ||||  |||  |||||||||||||| ||||||||||||||||    
T  2848776 tcttgtaatctgggcaatgcatgctgcttgatgaaattgaaagattatgaacggg 2848722  T

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Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 100 - 136
Target Start/End: Original strand, 4008181 - 4008217
Alignment:
Q  100 tgtctcccatcttatagaaaatcacatctcttgttta 136  Q
    ||||||||||||||||||||| ||| |||||||||||    
T  4008181 tgtctcccatcttatagaaaaccacttctcttgttta 4008217  T

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