View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13876_high_38 (Length: 238)
Name: NF13876_high_38
Description: NF13876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13876_high_38 |
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Alignment Details
Target: chr6 (Bit Score: 199; Significance: 1e-108; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 19 - 229
Target Start/End: Original strand, 25323270 - 25323480
Alignment:
| Q |
19 |
gtcttgacatttcaaaaacaaacaatatgtcaatgtcaaacattcctcttactttgaaaactattcattttgagagcaatgattggttaattagtttata |
118 |
Q |
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| T |
25323270 |
gtcttgacatttcaaaaacaaacaatatgtcaatgtcaaacattcctcttactttgaaaactattcattttgagagcaatgattggttaattagtttata |
25323369 |
T |
|
| Q |
119 |
taatccgtttcaacatgtcaacatcacacaaacattagtacgttacggcgtgtgtgtgaattctacaggtcaccaaaattgaaattaaaacaactctctc |
218 |
Q |
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||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
25323370 |
taatccgtttcaatatgtcaacatcacacaaacattagtacattacggcgtgtgtgtgaattctacaggtcactaaaattgaaattaaaacaactctctc |
25323469 |
T |
|
| Q |
219 |
tccccctctct |
229 |
Q |
| |
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||||||||||| |
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| T |
25323470 |
tccccctctct |
25323480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 19 - 229
Target Start/End: Original strand, 26152963 - 26153173
Alignment:
| Q |
19 |
gtcttgacatttcaaaaacaaacaatatgtcaatgtcaaacattcctcttactttgaaaactattcattttgagagcaatgattggttaattagtttata |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26152963 |
gtcttgacatttcaaaaacaaacaatatgtcaatgtcaaacattcctcttactttgaaaactattcattttgagagcaatgattggttaattagtttata |
26153062 |
T |
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| Q |
119 |
taatccgtttcaacatgtcaacatcacacaaacattagtacgttacggcgtgtgtgtgaattctacaggtcaccaaaattgaaattaaaacaactctctc |
218 |
Q |
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||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
26153063 |
taatccgtttcaatatgtcaacatcacacaaacattagtacattacggcgtgtgtgtgaattctacaggtcactaaaattgaaattaaaacaactctctc |
26153162 |
T |
|
| Q |
219 |
tccccctctct |
229 |
Q |
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||||||||||| |
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| T |
26153163 |
tccccctctct |
26153173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 45 - 120
Target Start/End: Complemental strand, 25990649 - 25990574
Alignment:
| Q |
45 |
atgtcaatgtcaaacattcctcttactttgaaaactattcattttgagagcaatgattggttaattagtttatata |
120 |
Q |
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|||||||||||||| ||||||||| ||||||||||||||||||||||||| ||||||| ||||||||||||||||| |
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| T |
25990649 |
atgtcaatgtcaaatattcctcttgctttgaaaactattcattttgagaggaatgattagttaattagtttatata |
25990574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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