View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13876_high_4 (Length: 691)
Name: NF13876_high_4
Description: NF13876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13876_high_4 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 306; Significance: 1e-172; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 319 - 681
Target Start/End: Complemental strand, 3015306 - 3014934
Alignment:
| Q |
319 |
atctgaattataaacgatacctttaaaatgccttgaaggatatctactcccaaaacaatggaatccttattgttgaagacagaattgggcatgatcttga |
418 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3015306 |
atctgaattataaatgatacctttaaaatgccttgaaggatatttactcccaaaacaatggaatccttattgttgaagacagaattgggcatgatcttga |
3015207 |
T |
|
| Q |
419 |
gaatgcaggcctcatcagcagaatctttcttgttctcatccttattgttgttcatgtgagtaatgttgttcctgtacctcttaaattgatcaaatagatg |
518 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |||||||||||||||||||| |
|
|
| T |
3015206 |
gaacgcaggcctcatcagcagaatctttcttgttctcatccttattgttgttcatgtgagtaatgttgtccttgtacctattaaattgatcaaatagatg |
3015107 |
T |
|
| Q |
519 |
atgcattttatcggagataaaaattttgacacccaatttatgtgcaagttgccaagcttcaggagtgactctggcaggaaacgccaatatagcagcatac |
618 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
3015106 |
atgcattttatcggagataaatattttgacacccaatttatgtgcaagttgccaagcttcaggggtgactctggcaggaaacgccaatatagcagcatac |
3015007 |
T |
|
| Q |
619 |
tctggtttcttttcaagcattgcac----------tggccttctccacatccttcttatgtataggacctatg |
681 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3015006 |
tctggtttcttttcaagcattgcactggcttgcactggccttctccacatccttcttatgtataggacctatg |
3014934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 19 - 293
Target Start/End: Complemental strand, 3015579 - 3015305
Alignment:
| Q |
19 |
aaaatgcaacgagggtttctactttcactacttgtagcaaggtacatggtgaagttcacataagtagggtggacgatgaataagttgcacaacaatttca |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3015579 |
aaaatgcaacgagggtttctactttcactacttgtagcaaggtacatggtgaaattcacataagtagggtggacgatgaataagttgcacaacaatttca |
3015480 |
T |
|
| Q |
119 |
atctcttttgctgtgccataaggtgtatataattttcattccaaaattttcacctccccgctttaacagcaggaggataaacgtatccaaggccacaaaa |
218 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3015479 |
atcttttttgctgtgccataaggtgtatataattttcattccaaaattttcacctccccgttttaacagcaggaggataaacgtatccaaggccacaaaa |
3015380 |
T |
|
| Q |
219 |
aataacacagttgaatttacccccaatgcaagcaatacaatgttatgcaaagaaaacaagtatcgtcacaaacat |
293 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3015379 |
aataacacagttgaatttacccccaatgcaagcaatacaatgttatgcaaagaaaacaagtatcgtcacaaacat |
3015305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 176; Significance: 2e-94; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 343 - 681
Target Start/End: Original strand, 40671533 - 40671853
Alignment:
| Q |
343 |
aaaatgccttgaaggatatctactcccaaaacaatggaatccttattgttgaagacagaattgggcatgatcttgagaatgcaggcctcatcagcagaat |
442 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| |||||||| |||||||||| |||| ||| |||||||||||| |||||||||||||||||||| |
|
|
| T |
40671533 |
aaaatgccttgaaggacatctactcccaaaacaatgggatccttatggttgaagacaaaatttggcttgatcttgagaacgcaggcctcatcagcagaat |
40671632 |
T |
|
| Q |
443 |
ctttcttgttctcatccttattgttgttcatgtgagtaatgttgttcctgtacctcttaaattgatcaaatagatgatgcattttatcggagataaaaat |
542 |
Q |
| |
|
||||||| | | | |||||| ||||||||| |||| |||||||| ||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
40671633 |
ctttcttttgcgcctcctta------------------atgttgttcatgtaagtcttaaatcgatcaaatagatgatgcattttatcggagatgaaaat |
40671714 |
T |
|
| Q |
543 |
tttgacacccaatttatgtgcaagttgccaagcttcaggagtgactctggcaggaaacgccaatatagcagcatactctggtttcttttcaagcattgca |
642 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| |||| ||||| |||||||||||||||| | | |||||||||||||||||||||||||||||||| |
|
|
| T |
40671715 |
tttgacacccaatttgtgtgcaagttgccaagctccaggggtgaccatggcaggaaacgccaacacaacagcatactctggtttcttttcaagcattgca |
40671814 |
T |
|
| Q |
643 |
ctggccttctccacatccttcttatgtataggacctatg |
681 |
Q |
| |
|
|||||||||||||||||||||||||| | |||||||||| |
|
|
| T |
40671815 |
ctggccttctccacatccttcttatgaacaggacctatg |
40671853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 81; Significance: 9e-38; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 334 - 681
Target Start/End: Complemental strand, 44607863 - 44607525
Alignment:
| Q |
334 |
gatacctttaaaatgccttgaaggatatctactcccaaaacaatggaatccttattgttgaagacagaattgggcatgatcttgagaatgcagg------ |
427 |
Q |
| |
|
||||||||||||||||||| ||||||||| |||||||||| ||| | |||||| |||||||||||| |||| || |||||||| |||| ||| | |
|
|
| T |
44607863 |
gatacctttaaaatgcctttaaggatatcaactcccaaaataatcggatccttcttgttgaagacacaatttggtatgatcttcagaacgcatggaaaga |
44607764 |
T |
|
| Q |
428 |
---cctcatcagcagaatctttcttgttctcatccttattgttgttcatgtgagtaatgttgttcctgtacctcttaaattgatcaaatagatgatgcat |
524 |
Q |
| |
|
||||||||||||| |||||||| ||||| |||||| ||||| ||||| | |||| ||||||||||||||||||||| || |
|
|
| T |
44607763 |
ctgcctcatcagcagattctttctttttctcctccttaatgttggccatgtaa----------------acct--taaattgatcaaatagatgataaat |
44607682 |
T |
|
| Q |
525 |
tttatcggagataaaaattttgacacccaatttatgtgcaagttgccaagcttcaggagtgactctggcaggaaacgccaatatagcagcatactctggt |
624 |
Q |
| |
|
|||||| ||||||||||| ||||||||||||| |||||||| | |||||||| |||||| || || |||||||||||||| || ||| ||| || |
|
|
| T |
44607681 |
aatatcggcaataaaaattttcacacccaatttatctgcaagttccttagcttcagaggtgactttgacatcaaacgccaatatagtagaatattctcgt |
44607582 |
T |
|
| Q |
625 |
ttcttttcaagcattgcactggccttctccacatccttcttatgtataggacctatg |
681 |
Q |
| |
|
||||||||||||||| ||||||||||| ||||||||||||||||| ||| |||||| |
|
|
| T |
44607581 |
ttcttttcaagcattacactggccttcatcacatccttcttatgtacagggcctatg |
44607525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 240 - 670
Target Start/End: Complemental strand, 44629462 - 44629042
Alignment:
| Q |
240 |
cccaatgcaagcaatacaatgttatgcaaagaaaacaagtatcgtcacaaacattgcaaccacaatgagagaaaagattatctgaattataaacgat-ac |
338 |
Q |
| |
|
||||| |||||||||||||| ||||||| ||||||| |||| |||||||||||| ||||| ||| | |||| | ||||||||| ||| || || |
|
|
| T |
44629462 |
cccaaggcaagcaatacaatcttatgcagagaaaactgctatcaatacaaacattgcatccacattgaaa--aaagttcgtctgaattaaaaagaattac |
44629365 |
T |
|
| Q |
339 |
ctttaaaatgccttgaaggatatctactcccaaaacaatggaatccttattgttgaagacagaattgggcatgatcttgagaatgcagg---------cc |
429 |
Q |
| |
|
|||||||||||||| ||||||||| |||||||||||||| | |||||| |||||||||||| |||| || | |||||| |||| || | || |
|
|
| T |
44629364 |
ctttaaaatgccttcaaggatatcaactcccaaaacaattggatccttcttgttgaagacacaatttggtaagatcttcagaacacatgggaagactgcc |
44629265 |
T |
|
| Q |
430 |
tcatcagcagaatctttcttgttctcatccttattgttgttcatgtgagtaatgttgttcctgtacctcttaaattgatcaaatagatgatgcattttat |
529 |
Q |
| |
|
||||| ||||| |||||||| ||||| |||||| |||||| ||||| || ||||||||||||||||||||||| || ||| |
|
|
| T |
44629264 |
tcatccgcagattctttctttttctcctccttaatgttgtccatgtaagc------------------cttaaattgatcaaatagatgataaatgatat |
44629183 |
T |
|
| Q |
530 |
cggagataaaaattttgacacccaatttatgtgcaagttgccaagcttcaggagtgactctggcaggaaacgccaatatagcagcatactctggtttctt |
629 |
Q |
| |
|
||| |||||||| || |||||||||| | |||||| | || ||||||||| |||||| || || ||| |||||||||| |||||| ||| ||||||| |
|
|
| T |
44629182 |
cggctataaaaatcttcacacccaattcctctgcaagatccctagcttcaggggtgactttgacatcaaatgccaatatagtagcatattctcgtttctt |
44629083 |
T |
|
| Q |
630 |
ttcaagcattgcactggccttctccacatccttcttatgta |
670 |
Q |
| |
|
||||||||| ||||||||||| ||||||||||||||||| |
|
|
| T |
44629082 |
ttcaagcatcacactggccttcatcacatccttcttatgta |
44629042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University