View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13876_high_5 (Length: 668)

Name: NF13876_high_5
Description: NF13876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13876_high_5
NF13876_high_5
[»] chr2 (17 HSPs)
chr2 (287-492)||(14187993-14188197)
chr2 (15-206)||(14188279-14188470)
chr2 (525-645)||(14190684-14190804)
chr2 (13-76)||(14898874-14898937)
chr2 (13-75)||(630823-630885)
chr2 (13-75)||(636374-636436)
chr2 (13-75)||(7909968-7910030)
chr2 (13-75)||(7917423-7917485)
chr2 (13-75)||(14893322-14893384)
chr2 (13-75)||(22430440-22430502)
chr2 (13-75)||(22436034-22436096)
chr2 (13-75)||(43777083-43777145)
chr2 (589-634)||(6336921-6336966)
chr2 (14-75)||(26694245-26694306)
chr2 (14-75)||(26702341-26702402)
chr2 (13-75)||(22425070-22425132)
chr2 (168-200)||(26694149-26694181)
[»] chr4 (11 HSPs)
chr4 (13-197)||(53529692-53529881)
chr4 (13-202)||(39119439-39119628)
chr4 (132-193)||(36088962-36089023)
chr4 (34-85)||(26868247-26868298)
chr4 (13-75)||(6156643-6156705)
chr4 (13-75)||(6162340-6162402)
chr4 (14-75)||(53982186-53982247)
chr4 (29-92)||(51835148-51835211)
chr4 (13-75)||(20192597-20192659)
chr4 (13-75)||(20197961-20198023)
chr4 (13-66)||(28295239-28295291)
[»] chr5 (9 HSPs)
chr5 (13-204)||(23690298-23690489)
chr5 (13-195)||(26459295-26459480)
chr5 (15-148)||(23775198-23775335)
chr5 (15-148)||(23862152-23862289)
chr5 (13-199)||(23695337-23695523)
chr5 (13-95)||(54442-54524)
chr5 (13-75)||(28366986-28367048)
chr5 (13-75)||(28375726-28375788)
chr5 (13-76)||(34647939-34648002)
[»] chr1 (10 HSPs)
chr1 (13-95)||(22575870-22575952)
chr1 (22-88)||(29644973-29645039)
chr1 (141-195)||(22575977-22576031)
chr1 (13-75)||(15716716-15716778)
chr1 (13-75)||(27178975-27179037)
chr1 (13-75)||(27194976-27195038)
chr1 (13-75)||(15711135-15711197)
chr1 (13-75)||(16498729-16498791)
chr1 (13-75)||(17721831-17721893)
chr1 (13-75)||(26711482-26711544)
[»] chr6 (4 HSPs)
chr6 (13-176)||(31023294-31023462)
chr6 (13-75)||(14856029-14856091)
chr6 (14-75)||(26680662-26680723)
chr6 (13-75)||(14847171-14847233)
[»] chr3 (15 HSPs)
chr3 (13-95)||(17033220-17033301)
chr3 (35-95)||(19307747-19307807)
chr3 (13-75)||(13985352-13985414)
chr3 (13-75)||(2174223-2174285)
chr3 (13-75)||(3110514-3110576)
chr3 (13-75)||(3112131-3112193)
chr3 (13-75)||(13990924-13990986)
chr3 (13-75)||(40802567-40802629)
chr3 (13-75)||(2168656-2168718)
chr3 (13-75)||(23338921-23338983)
chr3 (13-75)||(23344468-23344530)
chr3 (13-75)||(40800643-40800705)
chr3 (43-85)||(43508537-43508579)
chr3 (13-75)||(48216341-48216403)
chr3 (65-179)||(3077243-3077360)
[»] chr8 (7 HSPs)
chr8 (13-95)||(2232087-2232168)
chr8 (40-92)||(13242887-13242939)
chr8 (17-128)||(7545991-7546102)
chr8 (13-95)||(16845727-16845808)
chr8 (13-75)||(12756167-12756229)
chr8 (13-75)||(24052039-24052101)
chr8 (15-75)||(41043571-41043631)
[»] chr7 (12 HSPs)
chr7 (13-92)||(9506706-9506786)
chr7 (99-197)||(9018790-9018887)
chr7 (36-95)||(22527733-22527792)
chr7 (13-75)||(557877-557939)
chr7 (13-75)||(576060-576122)
chr7 (13-95)||(29204841-29204922)
chr7 (13-75)||(25493931-25493993)
chr7 (17-75)||(16648515-16648573)
chr7 (17-75)||(17622876-17622934)
chr7 (13-75)||(25499168-25499230)
chr7 (14-75)||(42167627-42167688)
chr7 (168-200)||(44655595-44655627)
[»] scaffold0004 (2 HSPs)
scaffold0004 (13-75)||(345676-345738)
scaffold0004 (13-75)||(350997-351059)


Alignment Details
Target: chr2 (Bit Score: 171; Significance: 2e-91; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 287 - 492
Target Start/End: Complemental strand, 14188197 - 14187993
Alignment:
Q  287 gtagtcacattttagacta--agtttcctgcctaacccttaaactacaccaaaaaccttgcttgaatgaacggatacacagaaaattagacaaacaatgt 384  Q
    |||||||||||||||||||  ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  14188197 gtagtcacattttagactataagtttcctgcctaacccttaaactacaccaaaaactttgcttgaatgaacggatacacagaaaattagacaaacaatgt 14188098  T
Q  385 cacaaaagcatacatgactgacagaattctttcttttttctttatgcttgtgttttgtgggttctgtattttatacactaaaccaaattgcaaagctaat 484  Q
    ||||||||||||   |||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14188097 cacaaaagcata---gactgacaaaattctttcttttttctttttgcttgtgttttgtgggttctgtattttatacactaaaccaaattgcaaagctaat 14188001  T
Q  485 gaaataca 492  Q
    ||||||||    
T  14188000 gaaataca 14187993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 160; E-Value: 6e-85
Query Start/End: Original strand, 15 - 206
Target Start/End: Complemental strand, 14188470 - 14188279
Alignment:
Q  15 tattctcttgtggtgtacaattatgttacatgtggtctctatttatagagaagtacaatgatatgacttaagagttaagtaagaataaatacaaataggt 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||| ||||||||| |    
T  14188470 tattctcttgtggtgtacaattatgttacatgtggtctctatttatagagaagtacaatgatatgactcaaaagttaagtaaggataagtacaaatagat 14188371  T
Q  115 gtgacttaaaagaaaagtaatatgttgtcacttaagagataaatacaagggtttatggacatccacttgttatattcataacaaataaatga 206  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| |||||||||||||||||||||||    
T  14188370 gtgacttaaaagaaaagtaatatgttgtcacttaacagataaatacaagggtttctggacatccacttattatattcataacaaataaatga 14188279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 525 - 645
Target Start/End: Original strand, 14190684 - 14190804
Alignment:
Q  525 tacagtggtacaaacaggatgagaaaagtgtgttaaaaagagaagtttgaatacataattgtacatcaagacctccaagtaacagcacatctaatcaaaa 624  Q
    |||| ||||||||| | |||||||||||| ||||| |||||||||| ||| || ||||||||||||||||||||||||||||||| ||||||||||||||    
T  14190684 tacaatggtacaaaaaagatgagaaaagtatgttacaaagagaagtgtgactaaataattgtacatcaagacctccaagtaacagaacatctaatcaaaa 14190783  T
Q  625 tgtgtattacacgacggaata 645  Q
    |||| |||||||||| |||||    
T  14190784 tgtgcattacacgaccgaata 14190804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 13 - 76
Target Start/End: Complemental strand, 14898937 - 14898874
Alignment:
Q  13 attattctcttgtggtgtacaattatgttacatgtggtctctatttatagagaagtacaatgat 76  Q
    |||||||||||||| |||| ||||| ||||||| ||  |||||||||||||||| |||||||||    
T  14898937 attattctcttgtgatgtataattaggttacatatgagctctatttatagagaaatacaatgat 14898874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 13 - 75
Target Start/End: Complemental strand, 630885 - 630823
Alignment:
Q  13 attattctcttgtggtgtacaattatgttacatgtggtctctatttatagagaagtacaatga 75  Q
    |||||||||||||| |||| ||||| ||||||| ||  |||||||||||||||| ||||||||    
T  630885 attattctcttgtgatgtataattaggttacatatgagctctatttatagagaaatacaatga 630823  T

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Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 13 - 75
Target Start/End: Complemental strand, 636436 - 636374
Alignment:
Q  13 attattctcttgtggtgtacaattatgttacatgtggtctctatttatagagaagtacaatga 75  Q
    |||||||||||||| |||| ||||| ||||||| ||  |||||||||||||||| ||||||||    
T  636436 attattctcttgtgatgtataattaggttacatatgagctctatttatagagaaatacaatga 636374  T

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Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 13 - 75
Target Start/End: Original strand, 7909968 - 7910030
Alignment:
Q  13 attattctcttgtggtgtacaattatgttacatgtggtctctatttatagagaagtacaatga 75  Q
    |||||||||||||| |||| ||||| ||||||| ||  |||||||||||||||| ||||||||    
T  7909968 attattctcttgtgatgtataattaggttacatatgagctctatttatagagaaatacaatga 7910030  T

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Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 13 - 75
Target Start/End: Original strand, 7917423 - 7917485
Alignment:
Q  13 attattctcttgtggtgtacaattatgttacatgtggtctctatttatagagaagtacaatga 75  Q
    |||||||||||||| |||| ||||| ||||||| ||  |||||||||||||||| ||||||||    
T  7917423 attattctcttgtgatgtataattaggttacatatgagctctatttatagagaaatacaatga 7917485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 13 - 75
Target Start/End: Complemental strand, 14893384 - 14893322
Alignment:
Q  13 attattctcttgtggtgtacaattatgttacatgtggtctctatttatagagaagtacaatga 75  Q
    |||||||||||||| |||| ||||| ||||||| ||  |||||||||||||||| ||||||||    
T  14893384 attattctcttgtgatgtataattaggttacatatgagctctatttatagagaaatacaatga 14893322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 13 - 75
Target Start/End: Complemental strand, 22430502 - 22430440
Alignment:
Q  13 attattctcttgtggtgtacaattatgttacatgtggtctctatttatagagaagtacaatga 75  Q
    |||||||||||||| |||| ||||| ||||||| ||  |||||||||||||||| ||||||||    
T  22430502 attattctcttgtgatgtataattaggttacatatgagctctatttatagagaaatacaatga 22430440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 13 - 75
Target Start/End: Complemental strand, 22436096 - 22436034
Alignment:
Q  13 attattctcttgtggtgtacaattatgttacatgtggtctctatttatagagaagtacaatga 75  Q
    |||||||||||||| |||| ||||| ||||||| ||  |||||||||||||||| ||||||||    
T  22436096 attattctcttgtgatgtataattaggttacatatgagctctatttatagagaaatacaatga 22436034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 13 - 75
Target Start/End: Complemental strand, 43777145 - 43777083
Alignment:
Q  13 attattctcttgtggtgtacaattatgttacatgtggtctctatttatagagaagtacaatga 75  Q
    |||||||||||||| |||| ||||| ||||||| ||  |||||||||||||||| ||||||||    
T  43777145 attattctcttgtgatgtataattaggttacatatgagctctatttatagagaaatacaatga 43777083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 589 - 634
Target Start/End: Original strand, 6336921 - 6336966
Alignment:
Q  589 atcaagacctccaagtaacagcacatctaatcaaaatgtgtattac 634  Q
    ||||| ||||||||||||||  ||||||||||||||||||||||||    
T  6336921 atcaacacctccaagtaacaatacatctaatcaaaatgtgtattac 6336966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 75
Target Start/End: Complemental strand, 26694306 - 26694245
Alignment:
Q  14 ttattctcttgtggtgtacaattatgttacatgtggtctctatttatagagaagtacaatga 75  Q
    ||||||||||||| |||| ||||| ||||||| ||  |||||||||||||||| ||||||||    
T  26694306 ttattctcttgtgatgtataattaggttacatatgagctctatttatagagaaatacaatga 26694245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 75
Target Start/End: Complemental strand, 26702402 - 26702341
Alignment:
Q  14 ttattctcttgtggtgtacaattatgttacatgtggtctctatttatagagaagtacaatga 75  Q
    ||||||||||||| |||| ||||| ||||||| ||  |||||||||||||||| ||||||||    
T  26702402 ttattctcttgtgatgtataattaggttacatatgagctctatttatagagaaatacaatga 26702341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 13 - 75
Target Start/End: Complemental strand, 22425132 - 22425070
Alignment:
Q  13 attattctcttgtggtgtacaattatgttacatgtggtctctatttatagagaagtacaatga 75  Q
    |||||||||||||| |||| ||||  ||||||| ||  |||||||||||||||| ||||||||    
T  22425132 attattctcttgtgatgtataattgggttacatatgagctctatttatagagaaatacaatga 22425070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 168 - 200
Target Start/End: Complemental strand, 26694181 - 26694149
Alignment:
Q  168 tatggacatccacttgttatattcataacaaat 200  Q
    ||||||||||||||||| |||||||||||||||    
T  26694181 tatggacatccacttgtaatattcataacaaat 26694149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 98; Significance: 6e-48; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 13 - 197
Target Start/End: Complemental strand, 53529881 - 53529692
Alignment:
Q  13 attattctcttgtggtgtacaattatgttacatgtggtctctatttatagagaagtacaatgatatgacttaagagttaagta-----agaataaataca 107  Q
    |||||||| ||||| | |||  |||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||     || ||||  |||    
T  53529881 attattctattgtgatataccgttatgttatatgtggtctctatttatagagaagtgcaatgatatgacttaagagttaagtacttaaaggataagcaca 53529782  T
Q  108 aataggtgtgacttaaaagaaaagtaatatgttgtcacttaagagataaatacaagggtttatggacatccacttgttatattcataaca 197  Q
    |||||||||||||||||||| ||| |||||| |||||||||| |||||||||||||||||| ||||||| |||||  |||||||||||||    
T  53529781 aataggtgtgacttaaaagataagaaatatggtgtcacttaaaagataaatacaagggtttgtggacattcacttagtatattcataaca 53529692  T

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Target: chr4; HSP #2
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 13 - 202
Target Start/End: Complemental strand, 39119628 - 39119439
Alignment:
Q  13 attattctcttgtggtgtacaattatgttacatgtggtctctatttatagagaagtacaatgatatgacttaagagttaagta----aga-ataaataca 107  Q
    |||||||| ||||| |||||||| |||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||    ||| |||| || |    
T  39119628 attattctgttgtgatgtacaat-atgttatatgtgatctctatttatagagaagtataatgatatgacttaagagttaagtacttaagagataagtata 39119530  T
Q  108 aataggtgtgacttaaaagaaaagtaatatgttgtcacttaagagataaatacaagggtttatggacatccacttgttatattcataacaaataa 202  Q
    ||||||||||||||| | || ||||||||||  |||||| ||||||||||||||||||||| |||||||||||   |||||||||||||||||||    
T  39119529 aataggtgtgacttaga-gataagtaatatggcgtcactaaagagataaatacaagggtttgtggacatccac---ttatattcataacaaataa 39119439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 132 - 193
Target Start/End: Original strand, 36088962 - 36089023
Alignment:
Q  132 taatatgttgtcacttaagagataaatacaagggtttatggacatccacttgttatattcat 193  Q
    ||||||| |||||||||||||||||||| |||||||| ||||||| ||||| | ||||||||    
T  36088962 taatatggtgtcacttaagagataaatataagggtttgtggacattcacttatgatattcat 36089023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 34 - 85
Target Start/End: Original strand, 26868247 - 26868298
Alignment:
Q  34 attatgttacatgtggtctctatttatagagaagtacaatgatatgacttaa 85  Q
    ||||||||| ||||| ||||||||| ||||||| ||||||||||||||||||    
T  26868247 attatgttatatgtgatctctatttgtagagaaatacaatgatatgacttaa 26868298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 13 - 75
Target Start/End: Complemental strand, 6156705 - 6156643
Alignment:
Q  13 attattctcttgtggtgtacaattatgttacatgtggtctctatttatagagaagtacaatga 75  Q
    |||||||||||||| |||| ||||| ||||||| ||  |||||||||||||||| ||||||||    
T  6156705 attattctcttgtgatgtataattaggttacatatgagctctatttatagagaaatacaatga 6156643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 13 - 75
Target Start/End: Complemental strand, 6162402 - 6162340
Alignment:
Q  13 attattctcttgtggtgtacaattatgttacatgtggtctctatttatagagaagtacaatga 75  Q
    |||||||||||||| |||| ||||| ||||||| ||  |||||||||||||||| ||||||||    
T  6162402 attattctcttgtgatgtataattaggttacatatgagctctatttatagagaaatacaatga 6162340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 75
Target Start/End: Complemental strand, 53982247 - 53982186
Alignment:
Q  14 ttattctcttgtggtgtacaattatgttacatgtggtctctatttatagagaagtacaatga 75  Q
    ||||||||||||| |||| ||||| ||||||| ||  |||||||||||||||| ||||||||    
T  53982247 ttattctcttgtgatgtataattaggttacatatgagctctatttatagagaaatacaatga 53982186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 92
Target Start/End: Original strand, 51835148 - 51835211
Alignment:
Q  29 gtacaattatgttacatgtggtctctatttatagagaagtacaatgatatgacttaagagttaa 92  Q
    |||||||||||||| |||   ||| ||||||||| |||||||||||||||||| ||| ||||||    
T  51835148 gtacaattatgttagatgcaatctttatttatagcgaagtacaatgatatgacgtaacagttaa 51835211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 13 - 75
Target Start/End: Original strand, 20192597 - 20192659
Alignment:
Q  13 attattctcttgtggtgtacaattatgttacatgtggtctctatttatagagaagtacaatga 75  Q
    |||||||||||||| |||| ||||| ||||||| |   |||||||||||||||| ||||||||    
T  20192597 attattctcttgtgatgtataattaggttacatataagctctatttatagagaaatacaatga 20192659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 13 - 75
Target Start/End: Original strand, 20197961 - 20198023
Alignment:
Q  13 attattctcttgtggtgtacaattatgttacatgtggtctctatttatagagaagtacaatga 75  Q
    |||||||||||||| |||| ||||| ||||||| |   |||||||||||||||| ||||||||    
T  20197961 attattctcttgtgatgtataattaggttacatataagctctatttatagagaaatacaatga 20198023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 66
Target Start/End: Original strand, 28295239 - 28295291
Alignment:
Q  13 attattctcttgtggtgtacaattatgttacatgtggtctctatttatagagaa 66  Q
    ||||||||| |||| ||||||| |||||||||||||  ||||||||||||||||    
T  28295239 attattctcatgtg-tgtacaagtatgttacatgtgagctctatttatagagaa 28295291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 79; Significance: 1e-36; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 13 - 204
Target Start/End: Original strand, 23690298 - 23690489
Alignment:
Q  13 attattctcttgtggtgtacaattatgttacatgtggtctctatttat---agagaagtacaatgatatgacttaagagttaagtaagaataaatacaaa 109  Q
    |||||| | ||||| |||||||||||||||||||||||||||||||||   |||||| ||||||||||||| |||| |||||||   | |||| ||| ||    
T  23690298 attattgtgttgtgatgtacaattatgttacatgtggtctctatttattatagagaaatacaatgatatgatttaacagttaag---ggataagtacgaa 23690394  T
Q  110 taggtgtgacttaaaagaaaagtaatatgttgtcacttaagagataaatacaagggtttatggacatccacttgttatattcataacaaataaat 204  Q
    || ||||||||||     ||||||||||| ||||||||||||||||| ||||| ||||| | ||||||||||| |||||||||||||||| ||||    
T  23690395 tatgtgtgacttagggataaagtaatatgatgtcacttaagagataagtacaaaggtttgtcgacatccacttattatattcataacaaaaaaat 23690489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 13 - 195
Target Start/End: Original strand, 26459295 - 26459480
Alignment:
Q  13 attattctcttgtggtgtacaattatgttacatgtggtctctatttatagagaagtacaatgatatgacttaagagttaagtaa-----gaataaataca 107  Q
    |||||| |||||| |||||||||||| ||||||||| ||||||||||| |||| |||||||||||| ||| |||||||||||||     | ||||  |||    
T  26459295 attattttcttgtagtgtacaattatattacatgtgatctctatttatggagacgtacaatgatattactcaagagttaagtaattaagggataa--aca 26459392  T
Q  108 aataggtgtgacttaaaagaaaagtaatatgttgtcacttaagagataaatacaagggtttatggacatccacttgttatattcataa 195  Q
    || | ||||||||||  ||| |||||| ||  | ||||||||||||||| ||||||||||| ||||||||||||| | ||||||||||    
T  26459393 aaaaagtgtgacttaggagataagtaaaatcatttcacttaagagataagtacaagggtttgtggacatccacttttgatattcataa 26459480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 15 - 148
Target Start/End: Complemental strand, 23775335 - 23775198
Alignment:
Q  15 tattctcttgtggtgtacaattatgttacatgtggtctctatttatagagaagtacaatgatatgacttaagagttaagta-----agaataaatacaaa 109  Q
    ||||||||| || ||||||||||| ||||||||| ||||||||||||||||||||||||||||||| |||| |||||||||     || |||||||||||    
T  23775335 tattctcttctgatgtacaattatcttacatgtgatctctatttatagagaagtacaatgatatga-ttaaaagttaagtacttaaaggataaatacaaa 23775237  T
Q  110 taggtgtgacttaaaagaaaagtaatatgttgtcactta 148  Q
    || ||||||||||||| | || ||||||| |||||||||    
T  23775236 tatgtgtgacttaaaaaataaataatatgatgtcactta 23775198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 15 - 148
Target Start/End: Complemental strand, 23862289 - 23862152
Alignment:
Q  15 tattctcttgtggtgtacaattatgttacatgtggtctctatttatagagaagtacaatgatatgacttaagagttaagta-----agaataaatacaaa 109  Q
    ||||||||| || ||||||||||| ||||||||| ||||||||||||||||||||||||||||||| |||| |||||||||     || |||||||||||    
T  23862289 tattctcttctgatgtacaattatcttacatgtgatctctatttatagagaagtacaatgatatga-ttaaaagttaagtacttaaaggataaatacaaa 23862191  T
Q  110 taggtgtgacttaaaagaaaagtaatatgttgtcactta 148  Q
    || ||||||||||||| | || ||||||| |||||||||    
T  23862190 tatgtgtgacttaaaaaataaataatatgatgtcactta 23862152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 13 - 199
Target Start/End: Original strand, 23695337 - 23695523
Alignment:
Q  13 attattctcttgtggtgtacaattatgttacatgtggtctctat---ttatagagaagtacaatgatatgacttaagagttaagtaagaataaatacaaa 109  Q
    |||||| ||||||| |||||||||||||||||||||||| ||||   |||||||||| |||||||||||||||||| ||||| |   | |||| ||| ||    
T  23695337 attattttcttgtgatgtacaattatgttacatgtggtcactatttattatagagaaatacaatgatatgacttaacagttatg---ggataagtacgaa 23695433  T
Q  110 taggtgtgacttaaaagaaaagtaatatgttgtcacttaagagataaatacaagggtttatggacatccacttgttatattcataacaaa 199  Q
    || ||||||||||     ||||||||||| | |||||||||||| ||  |||| ||||| ||||||||||||| |||||| |||||||||    
T  23695434 tatgtgtgacttagggataaagtaatatgatttcacttaagagacaaggacaaaggtttgtggacatccacttattatatacataacaaa 23695523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 13 - 95
Target Start/End: Original strand, 54442 - 54524
Alignment:
Q  13 attattctcttgtggtgtacaattatgttacatgtggtctctatttatagagaagtacaatgatatgacttaagagttaagta 95  Q
    ||||||| |||||| ||||||||| |||||||||||  ||||||||||| |||| |||||| |||||||||| ||||||||||    
T  54442 attattcacttgtgttgtacaattgtgttacatgtgaactctatttatatagaaatacaataatatgacttatgagttaagta 54524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 13 - 75
Target Start/End: Original strand, 28366986 - 28367048
Alignment:
Q  13 attattctcttgtggtgtacaattatgttacatgtggtctctatttatagagaagtacaatga 75  Q
    |||||||||||||| |||| ||||| ||||||| ||  |||||||||||||||| ||||||||    
T  28366986 attattctcttgtgatgtataattaggttacatatgagctctatttatagagaaatacaatga 28367048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 13 - 75
Target Start/End: Original strand, 28375726 - 28375788
Alignment:
Q  13 attattctcttgtggtgtacaattatgttacatgtggtctctatttatagagaagtacaatga 75  Q
    |||||||||||||| |||| ||||| ||||||| ||  |||||||||||||||| ||||||||    
T  28375726 attattctcttgtgatgtataattaggttacatatgagctctatttatagagaaatacaatga 28375788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 76
Target Start/End: Original strand, 34647939 - 34648002
Alignment:
Q  13 attattctcttgtggtgtacaattatgttacatgtggtctctatttatagagaagtacaatgat 76  Q
    |||||||||||||| |||||||||| ||||||| ||  ||| ||||||| |||| |||||||||    
T  34647939 attattctcttgtgatgtacaattaggttacatatgagctcaatttatacagaaatacaatgat 34648002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 75; Significance: 3e-34; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 13 - 95
Target Start/End: Original strand, 22575870 - 22575952
Alignment:
Q  13 attattctcttgtggtgtacaattatgttacatgtggtctctatttatagagaagtacaatgatatgacttaagagttaagta 95  Q
    ||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22575870 attattctcttgtagtgttcaattatgttacatgtggtctctatttatagagaagtacaatgatatgacttaagagttaagta 22575952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 22 - 88
Target Start/End: Complemental strand, 29645039 - 29644973
Alignment:
Q  22 ttgtggtgtacaattatgttacatgtggtctctatttatagagaagtacaatgatatgacttaagag 88  Q
    ||||| |||| |||||||||||||||| | | ||||||||||||||||||||||||||| |||||||    
T  29645039 ttgtgatgtataattatgttacatgtgatttttatttatagagaagtacaatgatatgatttaagag 29644973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 141 - 195
Target Start/End: Original strand, 22575977 - 22576031
Alignment:
Q  141 gtcacttaagagataaatacaagggtttatggacatccacttgttatattcataa 195  Q
    ||||||||||| |||| ||||||||||| ||||||||||||| ||||||||||||    
T  22575977 gtcacttaagaaataagtacaagggtttctggacatccacttattatattcataa 22576031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 13 - 75
Target Start/End: Complemental strand, 15716778 - 15716716
Alignment:
Q  13 attattctcttgtggtgtacaattatgttacatgtggtctctatttatagagaagtacaatga 75  Q
    |||||||||||||| |||| ||||| ||||||| ||  |||||||||||||||| ||||||||    
T  15716778 attattctcttgtgatgtataattacgttacatatgagctctatttatagagaaatacaatga 15716716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 13 - 75
Target Start/End: Original strand, 27178975 - 27179037
Alignment:
Q  13 attattctcttgtggtgtacaattatgttacatgtggtctctatttatagagaagtacaatga 75  Q
    |||||||||||||| |||| ||||| ||||||| ||  |||||||||||||||| ||||||||    
T  27178975 attattctcttgtgatgtataattaggttacatatgagctctatttatagagaaatacaatga 27179037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 13 - 75
Target Start/End: Original strand, 27194976 - 27195038
Alignment:
Q  13 attattctcttgtggtgtacaattatgttacatgtggtctctatttatagagaagtacaatga 75  Q
    |||||||||||||| |||| ||||| ||||||| ||  |||||||||||||||| ||||||||    
T  27194976 attattctcttgtgatgtataattaggttacatatgagctctatttatagagaaatacaatga 27195038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 13 - 75
Target Start/End: Complemental strand, 15711197 - 15711135
Alignment:
Q  13 attattctcttgtggtgtacaattatgttacatgtggtctctatttatagagaagtacaatga 75  Q
    |||||||||||||| |||| ||||| ||||||| ||  ||||||||||| |||| ||||||||    
T  15711197 attattctcttgtgatgtataattacgttacatatgagctctatttataaagaaatacaatga 15711135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 13 - 75
Target Start/End: Original strand, 16498729 - 16498791
Alignment:
Q  13 attattctcttgtggtgtacaattatgttacatgtggtctctatttatagagaagtacaatga 75  Q
    |||||||||||||||| | |||||| ||||||| ||  |||||||||||||||  ||||||||    
T  16498729 attattctcttgtggtatgcaattaggttacatatgagctctatttatagagagatacaatga 16498791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 13 - 75
Target Start/End: Complemental strand, 17721893 - 17721831
Alignment:
Q  13 attattctcttgtggtgtacaattatgttacatgtggtctctatttatagagaagtacaatga 75  Q
    |||||||||||||| |||||||||| |||||||  |  |||||||||||||||| || |||||    
T  17721893 attattctcttgtgatgtacaattaggttacatacgagctctatttatagagaaatataatga 17721831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 13 - 75
Target Start/End: Original strand, 26711482 - 26711544
Alignment:
Q  13 attattctcttgtggtgtacaattatgttacatgtggtctctatttatagagaagtacaatga 75  Q
    |||||||||||||| |||  ||||| ||||||| ||  |||||||||||||||| ||||||||    
T  26711482 attattctcttgtgatgtctaattaggttacatatgagctctatttatagagaaatacaatga 26711544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 60; Significance: 3e-25; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 13 - 176
Target Start/End: Complemental strand, 31023462 - 31023294
Alignment:
Q  13 attattctcttgtggtgtacaattatgttacatgtggtctctatttatagagaagtacaatgatatgacttaagagttaagta----aga-ataaataca 107  Q
    |||||| || |||| | ||||||||||||||||||| |||||||||||| |||| ||||||||||||||||||||||||  ||    ||| || |||| |    
T  31023462 attattttcatgtgatatacaattatgttacatgtgatctctatttatatagaactacaatgatatgacttaagagttagatactcgagagattaataaa 31023363  T
Q  108 aataggtgtgacttaaaagaaaagtaatatgttgtcacttaagagataaatacaagggtttatggacat 176  Q
    || | || | ||||| |||| |||||| |||| |||||||||||||||| ||||||||||| |||||||    
T  31023362 aacatgtttaacttagaagataagtaacatgtcgtcacttaagagataagtacaagggtttctggacat 31023294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 13 - 75
Target Start/End: Complemental strand, 14856091 - 14856029
Alignment:
Q  13 attattctcttgtggtgtacaattatgttacatgtggtctctatttatagagaagtacaatga 75  Q
    |||||||||||||| |||| ||||| ||||||| ||  |||||||||||||||| ||||||||    
T  14856091 attattctcttgtgatgtataattaggttacatatgagctctatttatagagaaatacaatga 14856029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 75
Target Start/End: Complemental strand, 26680723 - 26680662
Alignment:
Q  14 ttattctcttgtggtgtacaattatgttacatgtggtctctatttatagagaagtacaatga 75  Q
    ||||||||||||| |||| ||||| ||||||| ||  |||||||||||||||| ||||||||    
T  26680723 ttattctcttgtgatgtataattaggttacatatgagctctatttatagagaaatacaatga 26680662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 13 - 75
Target Start/End: Complemental strand, 14847233 - 14847171
Alignment:
Q  13 attattctcttgtggtgtacaattatgttacatgtggtctctatttatagagaagtacaatga 75  Q
    |||||||||||||| |||| ||||| ||||||| ||   ||||||||||||||| ||||||||    
T  14847233 attattctcttgtgatgtataattaggttacatatgagttctatttatagagaaatacaatga 14847171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 59; Significance: 1e-24; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 13 - 95
Target Start/End: Complemental strand, 17033301 - 17033220
Alignment:
Q  13 attattctcttgtggtgtacaattatgttacatgtggtctctatttatagagaagtacaatgatatgacttaagagttaagta 95  Q
    ||||||||||| |  |||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  17033301 attattctcttataatgtacaat-atgttacatgtggtctctatttatagagaagtacaattatatgacttaagagttaagta 17033220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 35 - 95
Target Start/End: Original strand, 19307747 - 19307807
Alignment:
Q  35 ttatgttacatgtggtctctatttatagagaagtacaatgatatgacttaagagttaagta 95  Q
    |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||    
T  19307747 ttatgttacatgtgatctctatttatagagaaatacaatgatatgacttaagagttaagta 19307807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 75
Target Start/End: Complemental strand, 13985414 - 13985352
Alignment:
Q  13 attattctcttgtggtgtacaattatgttacatgtggtctctatttatagagaagtacaatga 75  Q
    |||||||||||||| |||| ||||| ||||||| || ||||||||||||||||| ||||||||    
T  13985414 attattctcttgtgatgtataattaggttacatatgatctctatttatagagaaatacaatga 13985352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 13 - 75
Target Start/End: Original strand, 2174223 - 2174285
Alignment:
Q  13 attattctcttgtggtgtacaattatgttacatgtggtctctatttatagagaagtacaatga 75  Q
    |||||||||||||| |||| ||||| ||||||| ||  |||||||||||||||| ||||||||    
T  2174223 attattctcttgtgatgtataattaggttacatatgagctctatttatagagaaatacaatga 2174285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 13 - 75
Target Start/End: Original strand, 3110514 - 3110576
Alignment:
Q  13 attattctcttgtggtgtacaattatgttacatgtggtctctatttatagagaagtacaatga 75  Q
    |||||||||||||| |||| ||||| ||||||| ||  |||||||||||||||| ||||||||    
T  3110514 attattctcttgtgatgtataattaagttacatatgagctctatttatagagaaatacaatga 3110576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 13 - 75
Target Start/End: Original strand, 3112131 - 3112193
Alignment:
Q  13 attattctcttgtggtgtacaattatgttacatgtggtctctatttatagagaagtacaatga 75  Q
    |||||||||||||| |||| ||||| ||||||| ||  |||||||||||||||| ||||||||    
T  3112131 attattctcttgtgatgtataattaagttacatatgagctctatttatagagaaatacaatga 3112193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 13 - 75
Target Start/End: Complemental strand, 13990986 - 13990924
Alignment:
Q  13 attattctcttgtggtgtacaattatgttacatgtggtctctatttatagagaagtacaatga 75  Q
    |||||||||||||| |||| ||||| ||||||| ||  |||||||||||||||| ||||||||    
T  13990986 attattctcttgtgatgtataattaggttacatatgagctctatttatagagaaatacaatga 13990924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 13 - 75
Target Start/End: Original strand, 40802567 - 40802629
Alignment:
Q  13 attattctcttgtggtgtacaattatgttacatgtggtctctatttatagagaagtacaatga 75  Q
    |||||||||||||| |||| ||||| ||||||| ||  |||||||||||||||| ||||||||    
T  40802567 attattctcttgtgatgtataattaagttacatatgagctctatttatagagaaatacaatga 40802629  T

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Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 13 - 75
Target Start/End: Original strand, 2168656 - 2168718
Alignment:
Q  13 attattctcttgtggtgtacaattatgttacatgtggtctctatttatagagaagtacaatga 75  Q
    |||||||||||||| |||| ||||| | ||||| ||  |||||||||||||||| ||||||||    
T  2168656 attattctcttgtgatgtataattaggctacatatgagctctatttatagagaaatacaatga 2168718  T

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Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 13 - 75
Target Start/End: Complemental strand, 23338983 - 23338921
Alignment:
Q  13 attattctcttgtggtgtacaattatgttacatgtggtctctatttatagagaagtacaatga 75  Q
    |||||||||||||| | || ||||| ||||||| ||  |||||||||||||||| ||||||||    
T  23338983 attattctcttgtgatctataattaggttacatatgagctctatttatagagaaatacaatga 23338921  T

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Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 13 - 75
Target Start/End: Complemental strand, 23344530 - 23344468
Alignment:
Q  13 attattctcttgtggtgtacaattatgttacatgtggtctctatttatagagaagtacaatga 75  Q
    |||||||||||||| | || ||||| ||||||| ||  |||||||||||||||| ||||||||    
T  23344530 attattctcttgtgatctataattaggttacatatgagctctatttatagagaaatacaatga 23344468  T

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Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 13 - 75
Target Start/End: Original strand, 40800643 - 40800705
Alignment:
Q  13 attattctcttgtggtgtacaattatgttacatgtggtctctatttatagagaagtacaatga 75  Q
    |||||||||||||  |||| ||||| ||||||| ||  |||||||||||||||| ||||||||    
T  40800643 attattctcttgttatgtataattaggttacatatgagctctatttatagagaaatacaatga 40800705  T

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Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 43 - 85
Target Start/End: Complemental strand, 43508579 - 43508537
Alignment:
Q  43 catgtggtctctatttatagagaagtacaatgatatgacttaa 85  Q
    |||||| ||| ||||||||||||||||||||||||||| ||||    
T  43508579 catgtgatctttatttatagagaagtacaatgatatgatttaa 43508537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 13 - 75
Target Start/End: Original strand, 48216341 - 48216403
Alignment:
Q  13 attattctcttgtggtgtacaattatgttacatgtggtctctatttatagagaagtacaatga 75  Q
    |||||||||||||| | || ||||| ||||||| ||  |||||||||||||||| ||||||||    
T  48216341 attattctcttgtgatatataattaggttacatatgagctctatttatagagaaatacaatga 48216403  T

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Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 65 - 179
Target Start/End: Original strand, 3077243 - 3077360
Alignment:
Q  65 aagtacaatgatatgacttaagagttaagta----agaataaatacaaataggtgtgacttaaaagaaaagtaatatgttgtcacttaagagataaatac 160  Q
    |||||| ||||||||||||| ||||||||||    || |||| || ||| | |||||| |||  ||| |||||| ||| |||||||||||||||||| ||    
T  3077243 aagtacgatgatatgacttaggagttaagtatttaaggataagtataaaaatgtgtgatttaggagataagtaaaatgatgtcacttaagagataaa-ac 3077341  T
Q  161 aagggtttatggacatcca 179  Q
    |||||| | ||||| ||||    
T  3077342 aagggtatgtggacttcca 3077360  T

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Target: chr8 (Bit Score: 55; Significance: 3e-22; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 13 - 95
Target Start/End: Complemental strand, 2232168 - 2232087
Alignment:
Q  13 attattctcttgtggtgtacaattatgttacatgtggtctctatttatagagaagtacaatgatatgacttaagagttaagta 95  Q
    |||||| |||||||||||||||| ||||||||| || ||| |||||||||||||||| |||||||||||||||||||||||||    
T  2232168 attattatcttgtggtgtacaat-atgttacatatgatctatatttatagagaagtataatgatatgacttaagagttaagta 2232087  T

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Target: chr8; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 40 - 92
Target Start/End: Original strand, 13242887 - 13242939
Alignment:
Q  40 ttacatgtggtctctatttatagagaagtacaatgatatgacttaagagttaa 92  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  13242887 ttacatgtgatctctatttatagagaagtacaatgatatgacttaagagttaa 13242939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 17 - 128
Target Start/End: Complemental strand, 7546102 - 7545991
Alignment:
Q  17 ttctcttgtggtgtacaattatgttacatgtggtctctatttatagagaagtacaatgatatgacttaagagttaagta---agaataaatacaaatagg 113  Q
    |||||||||| | |||||| |||||||||||| | ||||||||||||||||||||   | |||||||||||||||||||   | ||||| |||||||| |    
T  7546102 ttctcttgtgttatacaataatgttacatgtgatatctatttatagagaagtaca---acatgacttaagagttaagtacttaaaataagtacaaatatg 7546006  T
Q  114 tgtgacttaaaagaa 128  Q
    ||||| ||| |||||    
T  7546005 tgtgatttagaagaa 7545991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 95
Target Start/End: Original strand, 16845727 - 16845808
Alignment:
Q  13 attattctcttgtggtgtacaattatgttacatgtggtctctatttatagagaagtacaatgatatgacttaagagttaagta 95  Q
    ||||||||||| || | ||||||||| |||||||||||| ||||||||  | |||||||||||||| ||||| ||||||||||    
T  16845727 attattctcttatgatatacaattatattacatgtggtc-ctatttattaaaaagtacaatgatatcacttatgagttaagta 16845808  T

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Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 13 - 75
Target Start/End: Original strand, 12756167 - 12756229
Alignment:
Q  13 attattctcttgtggtgtacaattatgttacatgtggtctctatttatagagaagtacaatga 75  Q
    |||||||||||||| |||| ||||| ||||||| ||  |||||||||||||||| ||||||||    
T  12756167 attattctcttgtgatgtataattaggttacatatgagctctatttatagagaaatacaatga 12756229  T

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Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 13 - 75
Target Start/End: Original strand, 24052039 - 24052101
Alignment:
Q  13 attattctcttgtggtgtacaattatgttacatgtggtctctatttatagagaagtacaatga 75  Q
    |||||||||||||| |||| ||||| ||||||| ||  |||||||||||||||| ||||||||    
T  24052039 attattctcttgtgatgtataattaggttacatatgagctctatttatagagaaatacaatga 24052101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 15 - 75
Target Start/End: Complemental strand, 41043631 - 41043571
Alignment:
Q  15 tattctcttgtggtgtacaattatgttacatgtggtctctatttatagagaagtacaatga 75  Q
    |||||||||||| |||| ||||| ||||||| ||  |||||||||||||||| ||||||||    
T  41043631 tattctcttgtgatgtataattaggttacatatgagctctatttatagagaaatacaatga 41043571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 1e-18; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 13 - 92
Target Start/End: Complemental strand, 9506786 - 9506706
Alignment:
Q  13 attattctcttgtggtgt-acaattatgttacatgtggtctctatttatagagaagtacaatgatatgacttaagagttaa 92  Q
    |||||| |||||||| || |||| ||||||||||||| |||||||||||||||||||||| |||||| |||||||||||||    
T  9506786 attattttcttgtggcgttacaaatatgttacatgtgatctctatttatagagaagtacagtgatataacttaagagttaa 9506706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 99 - 197
Target Start/End: Original strand, 9018790 - 9018887
Alignment:
Q  99 ataaatacaaataggtgtgacttaaaagaaaagtaatatgttgtcacttaagagataaatacaagggtttatggacatccacttgttatattcataaca 197  Q
    |||| ||||||||||||||||||||| || || |||||||  ||||||||| |||||| |||| |||||| ||||||||||||| | ||||||||||||    
T  9018790 ataagtacaaataggtgtgacttaaa-gataattaatatgacgtcacttaatagataagtacatgggtttgtggacatccacttataatattcataaca 9018887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 36 - 95
Target Start/End: Complemental strand, 22527792 - 22527733
Alignment:
Q  36 tatgttacatgtggtctctatttatagagaagtacaatgatatgacttaagagttaagta 95  Q
    ||||||||||||| | ||||||||||||||| || ||||||||||| |||||||||||||    
T  22527792 tatgttacatgtgatatctatttatagagaaatataatgatatgacataagagttaagta 22527733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 75
Target Start/End: Original strand, 557877 - 557939
Alignment:
Q  13 attattctcttgtggtgtacaattatgttacatgtggtctctatttatagagaagtacaatga 75  Q
    |||||||||||||| |||||||||| ||||||| ||  |||||||||||||||| ||||||||    
T  557877 attattctcttgtgatgtacaattaggttacatatgaactctatttatagagaaatacaatga 557939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 75
Target Start/End: Original strand, 576060 - 576122
Alignment:
Q  13 attattctcttgtggtgtacaattatgttacatgtggtctctatttatagagaagtacaatga 75  Q
    |||||||||||||| |||||||||| ||||||| ||  |||||||||||||||| ||||||||    
T  576060 attattctcttgtgatgtacaattaggttacatatgaactctatttatagagaaatacaatga 576122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 95
Target Start/End: Complemental strand, 29204922 - 29204841
Alignment:
Q  13 attattctcttgtggtgtacaattatgttacatgtggtctctatttatagagaagtacaatgatatgacttaagagttaagta 95  Q
    |||||||||||||||| | |||| ||||||||| ||||||||||||||||||| ||| || || || |||||| |||||||||    
T  29204922 attattctcttgtggtattcaat-atgttacatatggtctctatttatagagatgtataaggagataacttaatagttaagta 29204841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 13 - 75
Target Start/End: Complemental strand, 25493993 - 25493931
Alignment:
Q  13 attattctcttgtggtgtacaattatgttacatgtggtctctatttatagagaagtacaatga 75  Q
    |||||||||||||| ||||  |||||||||||| ||  |||||||||||||||| ||||||||    
T  25493993 attattctcttgtgatgtatcattatgttacatatgagctctatttatagagaaatacaatga 25493931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 17 - 75
Target Start/End: Complemental strand, 16648573 - 16648515
Alignment:
Q  17 ttctcttgtggtgtacaattatgttacatgtggtctctatttatagagaagtacaatga 75  Q
    |||||||||| |||| ||||| ||||||| ||  |||||||||||||||| ||||||||    
T  16648573 ttctcttgtgatgtataattaggttacatatgagctctatttatagagaaatacaatga 16648515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 17 - 75
Target Start/End: Complemental strand, 17622934 - 17622876
Alignment:
Q  17 ttctcttgtggtgtacaattatgttacatgtggtctctatttatagagaagtacaatga 75  Q
    |||||||||| |||| ||||| ||||||| ||  |||||||||||||||| ||||||||    
T  17622934 ttctcttgtgatgtataattaggttacatatgagctctatttatagagaaatacaatga 17622876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 13 - 75
Target Start/End: Complemental strand, 25499230 - 25499168
Alignment:
Q  13 attattctcttgtggtgtacaattatgttacatgtggtctctatttatagagaagtacaatga 75  Q
    |||||||||||||| ||||  |||| ||||||| ||  |||||||||||||||| ||||||||    
T  25499230 attattctcttgtgatgtatcattaggttacatatgagctctatttatagagaaatacaatga 25499168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 75
Target Start/End: Original strand, 42167627 - 42167688
Alignment:
Q  14 ttattctcttgtggtgtacaattatgttacatgtggtctctatttatagagaagtacaatga 75  Q
    ||||| ||||||| |||| ||||| ||||||| ||  |||||||||||||||| ||||||||    
T  42167627 ttattttcttgtgatgtataattaggttacatatgagctctatttatagagaaatacaatga 42167688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 168 - 200
Target Start/End: Complemental strand, 44655627 - 44655595
Alignment:
Q  168 tatggacatccacttgttatattcataacaaat 200  Q
    ||||||||||||||||| |||||||||||||||    
T  44655627 tatggacatccacttgtaatattcataacaaat 44655595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 13 - 75
Target Start/End: Original strand, 345676 - 345738
Alignment:
Q  13 attattctcttgtggtgtacaattatgttacatgtggtctctatttatagagaagtacaatga 75  Q
    |||||| |||| || |||| ||||| ||||||||||  |||||||||||||||| ||||||||    
T  345676 attattttcttatgatgtataattaggttacatgtgagctctatttatagagaaatacaatga 345738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 13 - 75
Target Start/End: Original strand, 350997 - 351059
Alignment:
Q  13 attattctcttgtggtgtacaattatgttacatgtggtctctatttatagagaagtacaatga 75  Q
    ||||||||||| || |||| ||||| ||||||| ||  |||||||||||||||| ||||||||    
T  350997 attattctcttatgatgtataattaggttacatatgagctctatttatagagaaatacaatga 351059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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