View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13876_high_6 (Length: 554)
Name: NF13876_high_6
Description: NF13876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13876_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 263; Significance: 1e-146; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 210 - 536
Target Start/End: Complemental strand, 43977169 - 43976843
Alignment:
| Q |
210 |
gaggtccttgtccttgacttccatttcttgatatgtaagaaacagaaacactagtagtctagaagaaaattgccaaatcagaaactccaccagcctcttc |
309 |
Q |
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| T |
43977169 |
gaggtccttgtccttgacttccatttcttggcatgtaagaaacagaaactctagtagtctagaagaaaattgtcaaatcagaaactccaccagcctcttc |
43977070 |
T |
|
| Q |
310 |
aatccaaggaacattgagagacaattttccatcacacaaccactcaaaagccacttcagaaccattcaattggcacttctttggtgattcatttgaataa |
409 |
Q |
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||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| |
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| T |
43977069 |
aatccaaggaacattgaaagacaattttccatcactcaaccactcaaaagccacttcagaaccattcaattgacacttctctggtgattcatttgaataa |
43976970 |
T |
|
| Q |
410 |
gcaaggaaattcccactacctttaaccttaatcttagcacaacattcaacatattccaaatctagaattgttccaccactgttgaacatgttagccaacc |
509 |
Q |
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||||||||||| |||| |||||||||||| ||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |
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| T |
43976969 |
gcaaggaaatttccaccacctttaaccttgatcatagcacaactttcaacatattccaaatctagaattgttccaccactgttgaacatgtttgccaatc |
43976870 |
T |
|
| Q |
510 |
caattggtgcaaatttgatgctgccac |
536 |
Q |
| |
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| T |
43976869 |
caattggtgcaaatttgatactgccac |
43976843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 17 - 142
Target Start/End: Complemental strand, 43977358 - 43977236
Alignment:
| Q |
17 |
aatctcaaatgaaacaaaattgagagaagaaatgtaaaccaaaagcacaattcatcatatcatttaaagtctaaagataaattattatcaaagatttaat |
116 |
Q |
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|||||||||||||| ||||||||||| |||||||||||||||||| || ||||||| |||||| |||||||||||||||| ||||||||| |||||| |
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| T |
43977358 |
aatctcaaatgaaataaaattgagaggagaaatgtaaaccaaaagttcagttcatcacatcattcaaagtctaaagataaa---ttatcaaaggtttaat |
43977262 |
T |
|
| Q |
117 |
gaactaaatcctctattaccaatctc |
142 |
Q |
| |
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|||||||||||||| |||||||||| |
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| T |
43977261 |
gaactaaatcctctgctaccaatctc |
43977236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 260 - 536
Target Start/End: Original strand, 43561893 - 43562169
Alignment:
| Q |
260 |
ctagtagtctagaagaaaattgccaaatcagaaactccaccagcctcttcaatccaaggaacattgagagacaattttccatcacacaaccactcaaaag |
359 |
Q |
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||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| ||||||||||||| | |||||||||| |
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| T |
43561893 |
ctagtagtctagaagaaaattgccaaatcagaaacaccacaagcctcttcaatccaaggaacattgagagataattttccatcacctagccactcaaaat |
43561992 |
T |
|
| Q |
360 |
ccacttcagaaccattcaattggcacttctttggtgattcatttgaataagcaaggaaattcccactacctttaaccttaatcttagcacaacattcaac |
459 |
Q |
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|||| | ||||||||||| ||| ||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| || |||||| |
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| T |
43561993 |
ccacattagaaccattcagttgaaacttctttggtgattcacttgaataagcaaggaaattcccaccacctttaaccttaatcttagcaccactttcaac |
43562092 |
T |
|
| Q |
460 |
atattccaaatctagaattgttccaccactgttgaacatgttagccaacccaattggtgcaaatttgatgctgccac |
536 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||||||||| | ||| ||||| ||||||||||||||| |||||| |
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| T |
43562093 |
atattccaaatcaagaattgttccaccactgttgaacatgtttgtcaatccaatgggtgcaaatttgatgttgccac |
43562169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 153; E-Value: 8e-81
Query Start/End: Original strand, 296 - 536
Target Start/End: Complemental strand, 44957140 - 44956900
Alignment:
| Q |
296 |
ccaccagcctcttcaatccaaggaacattgagagacaattttccatcacacaaccactcaaaagccacttcagaaccattcaattggcacttctttggtg |
395 |
Q |
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||||||||||| |||||||||||||||||||||| ||| ||| |||||| || ||||||||| ||||||||| ||||||||||||| |||||||||||| |
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| T |
44957140 |
ccaccagcctcatcaatccaaggaacattgagagtcaacttttcatcacccatccactcaaacgccacttcaaaaccattcaattgaaacttctttggtg |
44957041 |
T |
|
| Q |
396 |
attcatttgaataagcaaggaaattcccactacctttaaccttaatcttagcacaacattcaacatattccaaatctagaattgttccaccactgttgaa |
495 |
Q |
| |
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||||| |||||||||||||||||||||||| |||||||||||||||||| |||| || |||||||||||||||||| ||||||||||||||||| ||||| |
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| T |
44957040 |
attcacttgaataagcaaggaaattcccaccacctttaaccttaatctttgcaccactttcaacatattccaaatcaagaattgttccaccactattgaa |
44956941 |
T |
|
| Q |
496 |
catgttagccaacccaattggtgcaaatttgatgctgccac |
536 |
Q |
| |
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||| || | ||| ||||||||||||||||||||| |||||| |
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| T |
44956940 |
catatttgtcaatccaattggtgcaaatttgatggtgccac |
44956900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 179; Significance: 2e-96; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 260 - 534
Target Start/End: Original strand, 36429620 - 36429894
Alignment:
| Q |
260 |
ctagtagtctagaagaaaattgccaaatcagaaactccaccagcctcttcaatccaaggaacattgagagacaattttccatcacacaaccactcaaaag |
359 |
Q |
| |
|
|||||| ||||||||||||||||||| ||||| || |||| ||||||||||||||||| |||||||||||||| ||||||||||| || ||||||||||| |
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| T |
36429620 |
ctagtactctagaagaaaattgccaattcagacacaccactagcctcttcaatccaagaaacattgagagacagttttccatcacccagccactcaaaag |
36429719 |
T |
|
| Q |
360 |
ccacttcagaaccattcaattggcacttctttggtgattcatttgaataagcaaggaaattcccactacctttaaccttaatcttagcacaacattcaac |
459 |
Q |
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|||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |||| ||||||||||| ||||||||||| || ||| | |
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| T |
36429720 |
ccacttcagaaccattcaattgaaacttctttggtgattcacttgaataagcaaggaaatttccaccacctttaacctgaatcttagcaccactctcagc |
36429819 |
T |
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| Q |
460 |
atattccaaatctagaattgttccaccactgttgaacatgttagccaacccaattggtgcaaatttgatgctgcc |
534 |
Q |
| |
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||||||||||||||||| ||||||||||||||||||||| || | ||||||||||||||||||||||||| |||| |
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| T |
36429820 |
atattccaaatctagaactgttccaccactgttgaacatatttgtcaacccaattggtgcaaatttgatgttgcc |
36429894 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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