View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13876_high_7 (Length: 539)
Name: NF13876_high_7
Description: NF13876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13876_high_7 |
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Alignment Details
Target: chr7 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 4 - 518
Target Start/End: Complemental strand, 33445145 - 33444631
Alignment:
| Q |
4 |
tcttacatcacttaattgacaaaattaaaattcaatctttttggtggttagaggtgagttatgtcaacttaacttttaactatcatacatgttggttgaa |
103 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| ||||| | ||||||||||||||| |
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| T |
33445145 |
tcttacatcacttaattgacaaaattaaaattcaatctttttagtggttagaggtgaattatgtcaacttaactttcaactaccgtacatgttggttgaa |
33445046 |
T |
|
| Q |
104 |
ccctcttttgcgtttgggttgagttgtgtatttacggnnnnnnnnnnnnnnnnnnnn--cacccttcattgatgtaattgttacttacnnnnnnncttct |
201 |
Q |
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||||||||||||||||||||||| ||||||||| ||| |||||||||||||||||| |||||||||| ||||| |
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| T |
33445045 |
ccctcttttgcgtttgggttgagctgtgtattttcggttttttttttttgggtatttttcacccttcattgatgtaactgttacttactttttttcttct |
33444946 |
T |
|
| Q |
202 |
ttactcttctccggcattcctgtgcggagaaggtagagttgctcgttttatataatttcattttaacttcttnnnnnnnnnnttcatgtttgttgttaag |
301 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
33444945 |
ttactcttctccggcattcctgtgtggagaaggtagagttgctcgttttatataatttcattttaacttcttaaaaaaaaac--catgtttgttgttaag |
33444848 |
T |
|
| Q |
302 |
tacttaatgatttcgactaataaaagaataaatagtagagtaagttttggaaatagatcggtattgaaaacttggttgaaaatatggggcaactttcatt |
401 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| ||||||||||||||||||||||||| |
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| T |
33444847 |
tacttaatgatttcgactaataaaagaataaatagtagagtaagttttggaaacagatcggtgttgaaaactttgttgaaaatatggggcaactttcatg |
33444748 |
T |
|
| Q |
402 |
ttggctttctcaagaagttctatggcaattgaaataagctcacaaacttaccttacatcaatgccaatcaatgtttgtgttcaaatcaacacattgtgaa |
501 |
Q |
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|||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33444747 |
ttggctttctcaagaagttctatgacaattgacataagctcacaaacttaccttacatcaatgccaatcaatgtttgtgttcaaatcaacacattgtgaa |
33444648 |
T |
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| Q |
502 |
atccttattgtatcaac |
518 |
Q |
| |
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||||||||||||||||| |
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| T |
33444647 |
atccttattgtatcaac |
33444631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 21 - 126
Target Start/End: Original strand, 15523115 - 15523220
Alignment:
| Q |
21 |
gacaaaattaaaattcaatctttttggtggttagaggtgagttatgtcaacttaacttttaactatcatacatgttggttgaaccctcttttgcgtttgg |
120 |
Q |
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|||||||||||||||||||||||| ||||| | || ||| | |||||| ||||||||| ||||| || | || |||||||||||||||||| | |||| |
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| T |
15523115 |
gacaaaattaaaattcaatcttttcggtggctgaagatgaatcatgtcagcttaactttcaactaccacatgtggtggttgaaccctcttttgtgcttgg |
15523214 |
T |
|
| Q |
121 |
gttgag |
126 |
Q |
| |
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||||| |
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|
| T |
15523215 |
attgag |
15523220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 17212286 - 17212216
Alignment:
| Q |
19 |
ttgacaaaattaaaattcaatctttttggtggttagaggtgagttatgtcaacttaacttttaactatcat |
89 |
Q |
| |
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|||||||||||||||||||||||||||||| |||| | |||| |||||||||| |||| ||||||||| |
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| T |
17212286 |
ttgacaaaattaaaattcaatctttttggttgttaaatgtgaaacatgtcaactttgctttgaactatcat |
17212216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 52
Target Start/End: Complemental strand, 38758174 - 38758141
Alignment:
| Q |
19 |
ttgacaaaattaaaattcaatctttttggtggtt |
52 |
Q |
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|||||||||||||||||||||||||||| ||||| |
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| T |
38758174 |
ttgacaaaattaaaattcaatctttttgatggtt |
38758141 |
T |
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