View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13876_low_12 (Length: 504)
Name: NF13876_low_12
Description: NF13876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13876_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 338; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 115 - 496
Target Start/End: Complemental strand, 1542935 - 1542557
Alignment:
| Q |
115 |
ttccattcacatatattatttggaatcaatagcaccaacatttcaaatggaacgtgtgtcggtatcacatgtgattatatatattcaaatcaattatttt |
214 |
Q |
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| T |
1542935 |
ttccattcacatatattatttggaatcaatagcaccaacatttcaaatggaacgtgtgtcggtatcacatgtgattatat----tcaaataaattatttt |
1542840 |
T |
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| Q |
215 |
cttaaattattataggtgtcgatctcatatttggcgtcagtgttgtgtatggt-gttcgtatatgtgtctgcgcttcatatatcaataaaaccctatgca |
313 |
Q |
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| T |
1542839 |
cttaaattattataggtgtcgacatcatatttggcgtcagtgttgtgtatggttgttcgtatatgtgtctgtgcttcatatatcaataaaaccctatgca |
1542740 |
T |
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| Q |
314 |
gcaccaacatgaagatgacaaaacacagtgacaagtcaatcccggtaaacatgtaaacatgtcaatgttatagagataaaacccacatagacaaaagaat |
413 |
Q |
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| T |
1542739 |
gcaccaacatgaacatgacaaaacacagtgacaagtcaatcccggtaaacatgtaaacatgtcaatgttatagagataaaacccacatagacaaaagaat |
1542640 |
T |
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| Q |
414 |
aaatcatgcatttatatattatgatgattactttccgataacctccgcgaatgttttgatataaccatcgataatttcatctc |
496 |
Q |
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| T |
1542639 |
aaatcatgcatttatatattatgatgattactttccgataacctccgcgaatgttttgatataaccatcgataatttcatctc |
1542557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 23 - 62
Target Start/End: Complemental strand, 1543027 - 1542988
Alignment:
| Q |
23 |
gaaacagaatatatattcttcctagctagttcttcactgt |
62 |
Q |
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| T |
1543027 |
gaaacagaatatatattcttcctagctagttcttcactgt |
1542988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 427 - 496
Target Start/End: Complemental strand, 32424516 - 32424447
Alignment:
| Q |
427 |
atatattatgatgattactttccgataacctccgcgaatgttttgatataaccatcgataatttcatctc |
496 |
Q |
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|||||||||| | |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
32424516 |
atatattatggttattactttccgataacctccacgaatgttttgatataaccatcgataatttcatctc |
32424447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 116 - 174
Target Start/End: Complemental strand, 32425089 - 32425031
Alignment:
| Q |
116 |
tccattcacatatattatttggaatcaatagcaccaacatttcaaatggaacgtgtgtc |
174 |
Q |
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|||||||||| | ||||||| |||||||||||||||||||||| ||||||||| ||||| |
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| T |
32425089 |
tccattcacagacattatttagaatcaatagcaccaacatttctaatggaacgcgtgtc |
32425031 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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