View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13876_low_13 (Length: 501)
Name: NF13876_low_13
Description: NF13876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13876_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 393; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 18 - 495
Target Start/End: Complemental strand, 44055639 - 44055166
Alignment:
| Q |
18 |
aactctagctgttgcaatctattatcaaatgccgattcgcgaaggtgctacccttggcttactcatgaacacaaaaggactagttgaaatgattgtgctc |
117 |
Q |
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| T |
44055639 |
aactctagctgttgcaatctattatcgaatgccgattcgtgaaggtgctacccttggcttactcatgaacactaaaggactagttgaaatgattgtgctc |
44055540 |
T |
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| Q |
118 |
aatgttggaaaggaccaaaaggtgcaaatacaatactactattgattgctatttgtggtttgcttattcctctcaatcaatgactcattttgatnnnnnn |
217 |
Q |
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| T |
44055539 |
aatgttggaaaggaccaaaaggtgcaaatacaatactactaatgattgctatttgtggtttgcttattcctctcaat----gactcattttgataaaaaa |
44055444 |
T |
|
| Q |
218 |
nnnnnnnnnnttattgttacaggttttcgatgaagaatcatttgcagttatggtgatcataacagtcataatgactggaataattgtacctgctgtatca |
317 |
Q |
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| T |
44055443 |
aattaaaaaattattgttgcaggttttcgatgaagaatcatttgcagttatggtgatcataacagtcataatgactggaataattgtacctgctgtatca |
44055344 |
T |
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| Q |
318 |
ataatttatagaccatcaaggagaaacatatattacaaaagaagaacaattcagaaatcaaaaccagatgcagaatttaaagtactagtatgtgttcata |
417 |
Q |
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| T |
44055343 |
ataatttatagaccatcaaggagaaacatatattacaaaagaagaacaattcagaaatcaaaaccagatgcagaatttaaagtactagtatgtgttcata |
44055244 |
T |
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| Q |
418 |
gtcctcgaaacgtgccaacaatgatcagcctccttggagcctcgaatccaacaaagaggtcaccgatatgcgcctatg |
495 |
Q |
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| T |
44055243 |
gtcctcgaaacgtgccaacaatgatcagcctccttggagcctcgaatccaacaaagaggtcaccgatatgcgcctatg |
44055166 |
T |
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Back To:
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Target: chr8 (Bit Score: 72; Significance: 2e-32; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 288 - 487
Target Start/End: Complemental strand, 39237245 - 39237046
Alignment:
| Q |
288 |
atgactggaataattgtacctgctgtatcaataatttatagaccatcaaggagaaacatatattacaaaagaagaacaattcagaaatcaaaaccagatg |
387 |
Q |
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||||||||| | |||||||||| ||||||| || ||||||||||||||| ||| |||| ||||||||||||||||||||| | |||||| ||||| |
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| T |
39237245 |
atgactggattgattgtacctggaatatcaattatatatagaccatcaaggggaatgatatcttacaaaagaagaacaattcaaatgtcaaaaaaagatg |
39237146 |
T |
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| Q |
388 |
cagaatttaaagtactagtatgtgttcatagtcctcgaaacgtgccaacaatgatcagcctccttggagcctcgaatccaacaaagaggtcaccgatatg |
487 |
Q |
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| T |
39237145 |
cagagtttagagtactagtgtgtattcatacccctagaaatgttccaacaatgatcaacctcctggaagcctcaaatccaacaaaaaagtcaccaatatg |
39237046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 70 - 140
Target Start/End: Original strand, 2811915 - 2811985
Alignment:
| Q |
70 |
cttggcttactcatgaacacaaaaggactagttgaaatgattgtgctcaatgttggaaaggaccaaaaggt |
140 |
Q |
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| T |
2811915 |
cttggtttacttatgaacaccaaaggtcttattgaaatgattgtgctcaatattgggagggaacaaaaggt |
2811985 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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