View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13876_low_15 (Length: 469)

Name: NF13876_low_15
Description: NF13876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13876_low_15
NF13876_low_15
[»] chr7 (3 HSPs)
chr7 (17-456)||(1353705-1354144)
chr7 (226-373)||(1579156-1579302)
chr7 (297-395)||(16769937-16770035)
[»] chr2 (7 HSPs)
chr2 (140-439)||(35062887-35063186)
chr2 (56-162)||(177334-177442)
chr2 (321-373)||(1487309-1487361)
chr2 (230-370)||(16322460-16322599)
chr2 (233-373)||(26791335-26791474)
chr2 (291-373)||(3779042-3779124)
chr2 (321-359)||(41689289-41689327)
[»] chr4 (7 HSPs)
chr4 (230-388)||(14307794-14307951)
chr4 (230-388)||(14291745-14291902)
chr4 (230-367)||(3881729-3881865)
chr4 (233-373)||(33803992-33804131)
chr4 (220-373)||(48848175-48848327)
chr4 (43-164)||(24133445-24133568)
chr4 (29-89)||(33803786-33803846)
[»] chr3 (8 HSPs)
chr3 (233-370)||(17718355-17718491)
chr3 (233-370)||(19019584-19019720)
chr3 (233-373)||(53608294-53608433)
chr3 (321-385)||(55024781-55024845)
chr3 (279-370)||(15473443-15473534)
chr3 (29-177)||(17718547-17718697)
chr3 (29-177)||(19019776-19019926)
chr3 (297-367)||(11897228-11897298)
[»] chr1 (4 HSPs)
chr1 (230-364)||(50451909-50452042)
chr1 (218-427)||(50236505-50236713)
chr1 (297-427)||(10103620-10103750)
chr1 (297-395)||(23465427-23465527)
[»] chr5 (4 HSPs)
chr5 (233-427)||(23945013-23945206)
chr5 (233-331)||(5864791-5864888)
chr5 (217-370)||(6641013-6641165)
chr5 (29-89)||(23944826-23944886)
[»] chr8 (2 HSPs)
chr8 (294-403)||(26587301-26587410)
chr8 (58-107)||(13030041-13030090)
[»] chr6 (3 HSPs)
chr6 (297-364)||(24990669-24990736)
chr6 (233-367)||(24893839-24893972)
chr6 (348-418)||(27852904-27852974)
[»] scaffold0036 (1 HSPs)
scaffold0036 (295-373)||(75982-76060)
[»] scaffold0214 (1 HSPs)
scaffold0214 (233-370)||(8981-9117)


Alignment Details
Target: chr7 (Bit Score: 409; Significance: 0; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 17 - 456
Target Start/End: Complemental strand, 1354144 - 1353705
Alignment:
Q  17 attattggtctc-accaaagcaactttctgccaggcagaagcacttctgacaatgccattgttttgcaggaaatcttttattttatgagaaggtctaaaa 115  Q
    |||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1354144 attattggtctctaccaaagcaactttcttccaggcagaagcacttctgacaatgccattgttttgcaggaaatcttttattttatgagaaggtctaaaa 1354045  T
Q  116 taaaaaggttctgctgctttcaaacttgatcttgagaaatcttttgatattttcaactgggacttcctcaagagtactcttcaagatttcagtttctcta 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1354044 taaaaaggttctgctgctttcaaacttgatcttgagaaatcttttgatattttcaactgggacttcctcaagagtactcttcaagatttcagtttctcta 1353945  T
Q  216 ctatcacaaccaatcttatcatgcattgcgttgcctcctccactttctctatcctctggaatgggaaaaaagatgtctcccttcaagcctactcatggcc 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||    
T  1353944 ctatcacaaccaatcttatcatgcattgcgttgcctcctccactttctctatcctctcgaatggga-aaaagatgtctcccttcaagcctactcatggcc 1353846  T
Q  316 tcatacaaggtgatccactctcaccatatcttttcattctttgtatggaaaaactctcaatttccatcaacaacgttgtcctccaaggaaactgggaacc 415  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||    
T  1353845 tcatacaaggtgatccactctcaccatatcttttcattctttgtatggaaaaacactcaatttccatcaacaacgttgtcctccgaggaaactgggaacc 1353746  T
Q  416 catccacatcaccaacttagggccgaagttgtcccatcttc 456  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  1353745 catccacatcaccaacttagggccgaagttgtcccatcttc 1353705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 226 - 373
Target Start/End: Complemental strand, 1579302 - 1579156
Alignment:
Q  226 caatcttatcatgcattgcgttgcctcctccactttctctatcctctggaatgggaaaaaagatgtctcccttcaagcctactcatggcctcatacaagg 325  Q
    |||||| ||||||||||| ||| | || || ||||||||||| |||| |||| | ||| ||| || |||||||  | ||||||||||| |||| ||| ||    
T  1579302 caatctcatcatgcattgtgtttcttcttcaactttctctattctctagaatag-aaacaagttgcctccctttcatcctactcatgggctcagacaggg 1579204  T
Q  326 tgatccactctcaccatatcttttcattctttgtatggaaaaactctc 373  Q
    |||||| ||||| || || || || |||||||| |||||||| |||||    
T  1579203 tgatccgctctccccttacctctttattctttgcatggaaaagctctc 1579156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 297 - 395
Target Start/End: Complemental strand, 16770035 - 16769937
Alignment:
Q  297 ttcaagcctactcatggcctcatacaaggtgatccactctcaccatatcttttcattctttgtatggaaaaactctcaatttccatcaacaacgttgtc 395  Q
    ||||| ||||||||||| ||   |||||||||||| || ||||| ||||| |||||  | ||||||||||||||||||    |||||||||| ||||||    
T  16770035 ttcaaacctactcatggtcttcgacaaggtgatcctctttcaccttatctcttcatcttgtgtatggaaaaactctcagcagccatcaacaatgttgtc 16769937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 61; Significance: 5e-26; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 140 - 439
Target Start/End: Complemental strand, 35063186 - 35062887
Alignment:
Q  140 cttgatcttgagaaatcttttgatattttcaactgggacttcctcaagagtactcttcaagatttcagtttctc-tactatcacaaccaatcttatcatg 238  Q
    |||||||| |||||| ||||||||| | |||||||||| ||||||| |  |||  ||||||||||  ||||| | |  |||||  |  || |||||||||    
T  35063186 cttgatctggagaaagcttttgataatgtcaactgggatttcctcaggtctaccgttcaagattttggtttcccctgatatcatcattaaacttatcatg 35063087  T
Q  239 cattgcgttgcctcctccactttctctatcctctggaatgggaaaaaagatgtctcccttcaagcctactcatggcctcatacaaggtgatccactctca 338  Q
    ||||| |||||||| ||||||||||  ||||||| |||||| || || |||| ||||  | |||||||| | ||| || | ||||||||||||||| ||     
T  35063086 cattgtgttgcctcatccactttcttgatcctctagaatggcaacaa-gatgcctccacttaagcctacacgtggtcttagacaaggtgatccactatcc 35062988  T
Q  339 ccatatcttttcattctttgtatggaaaaactctcaatttccatcaacaacgttgtcctccaaggaaactgggaacccatccacatcaccaacttagggc 438  Q
    || ||||||||||| |||||||||||||| ||||   |  ||||||| ||  ||||  |||||||||  ||||| |||||||||||||| |||| |||||    
T  35062987 ccctatcttttcatcctttgtatggaaaagctctatgtcgccatcaataatattgtaatccaaggaacttgggagcccatccacatcactaactaagggc 35062888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 56 - 162
Target Start/End: Original strand, 177334 - 177442
Alignment:
Q  56 gcacttctgacaatgccattgttttgcaggaaatcttttattttatgagaaggtctaaaat--aaaaaggttctgctgctttcaaacttgatcttgagaa 153  Q
    |||||||||||||  | |||||||||||||||||  || |||||||| | || || ||||   |||||||||  | ||||||||||||||||||||||||    
T  177334 gcacttctgacaactctattgttttgcaggaaattgttcattttatgcggagatcaaaaaggaaaaaaggttacgttgctttcaaacttgatcttgagaa 177433  T
Q  154 atcttttga 162  Q
    | |||||||    
T  177434 agcttttga 177442  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 321 - 373
Target Start/End: Complemental strand, 1487361 - 1487309
Alignment:
Q  321 caaggtgatccactctcaccatatcttttcattctttgtatggaaaaactctc 373  Q
    ||||| ||||||||||| ||||| |||||||||||||| ||||| ||||||||    
T  1487361 caaggggatccactctctccataccttttcattctttgcatggagaaactctc 1487309  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 230 - 370
Target Start/End: Original strand, 16322460 - 16322599
Alignment:
Q  230 cttatcatgcattgcgttgcctcctccactttctctatcctctggaatgggaaaaaagatgtctcccttcaagcctactcatggcctcatacaaggtgat 329  Q
    |||||||||||||| ||  ||||  ||| ||  ||| |||| |||||||| ||| |||||| |||| |||||||| |||||||||||   |||||||||     
T  16322460 cttatcatgcattgtgtctcctcagccaattattctctcctatggaatgg-aaacaagatgcctcctttcaagcccactcatggccttcgacaaggtgac 16322558  T
Q  330 ccactctcaccatatcttttcattctttgtatggaaaaact 370  Q
    || || || || || |||||||| ||||| |||||||||||    
T  16322559 ccgctttctccgtaccttttcatactttgcatggaaaaact 16322599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 233 - 373
Target Start/End: Original strand, 26791335 - 26791474
Alignment:
Q  233 atcatgcattgcgttgcctcctccactttctctatcctctggaatgggaaaaaagatgtctcccttcaagcctactcatggcctcatacaaggtgatcca 332  Q
    ||||||||||||||| | || ||||  |||||||| || |||||||| ||| | | || |||| ||| ||||||||||||||||||  || ||||||||     
T  26791335 atcatgcattgcgttacttcatccagcttctctattctttggaatgg-aaataggttgcctcctttcgagcctactcatggcctcaggcagggtgatccg 26791433  T
Q  333 ctctcaccatatcttttcattctttgtatggaaaaactctc 373  Q
    || || || || ||||| |||||||| ||||| || |||||    
T  26791434 ctttccccgtacctttttattctttgcatggagaagctctc 26791474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 291 - 373
Target Start/End: Complemental strand, 3779124 - 3779042
Alignment:
Q  291 tctcccttcaagcctactcatggcctcatacaaggtgatccactctcaccatatcttttcattctttgtatggaaaaactctc 373  Q
    ||||| ||||||||||||||||| ||    |||||||| || || || || ||||||||||| || |||||||||||||||||    
T  3779124 tctcctttcaagcctactcatggacttcgtcaaggtgacccgctgtctccttatcttttcatcctctgtatggaaaaactctc 3779042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 321 - 359
Target Start/End: Complemental strand, 41689327 - 41689289
Alignment:
Q  321 caaggtgatccactctcaccatatcttttcattctttgt 359  Q
    |||||||||||||| ||||| ||||||||||||||||||    
T  41689327 caaggtgatccactttcaccttatcttttcattctttgt 41689289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 5e-20; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 230 - 388
Target Start/End: Original strand, 14307794 - 14307951
Alignment:
Q  230 cttatcatgcattgcgttgcctcctccactttctctatcctctggaatgggaaaaaagatgtctcccttcaagcctactcatggcctcatacaaggtgat 329  Q
    |||||||||||||| ||  |||| |||||| ||||||| || ||||||||||| || ||||  ||| || |||||| | |||||||||| |||||| |||    
T  14307794 cttatcatgcattgtgtcacctcttccactctctctattctttggaatgggaacaa-gatgcatccttttaagccttcccatggcctcagacaaggagat 14307892  T
Q  330 ccactctcaccatatcttttcattctttgtatggaaaaactctcaatttccatcaacaa 388  Q
    || | ||| || || ||||||||  |||||||||||||||| || ||||||||||||||    
T  14307893 cctccctcgccttaccttttcatcatttgtatggaaaaactttccatttccatcaacaa 14307951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 230 - 388
Target Start/End: Original strand, 14291745 - 14291902
Alignment:
Q  230 cttatcatgcattgcgttgcctcctccactttctctatcctctggaatgggaaaaaagatgtctcccttcaagcctactcatggcctcatacaaggtgat 329  Q
    |||||||||||||| ||  |||| |||||| ||||||| || ||||||||||| || ||||  ||| || |||||| | |||||||||| |||||| |||    
T  14291745 cttatcatgcattgtgtcacctcttccactctctctattctttggaatgggaacaa-gatgcatccttttaagccttcccatggcctcagacaaggagat 14291843  T
Q  330 ccactctcaccatatcttttcattctttgtatggaaaaactctcaatttccatcaacaa 388  Q
    || | ||| || || ||||||||  | |||||||||||||| || ||||||||||||||    
T  14291844 cctccctcgccttaccttttcatcatctgtatggaaaaactttccatttccatcaacaa 14291902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 230 - 367
Target Start/End: Original strand, 3881729 - 3881865
Alignment:
Q  230 cttatcatgcattgcgttgcctcctccactttctctatcctctggaatgggaaaaaagatgtctcccttcaagcctactcatggcctcatacaaggtgat 329  Q
    |||||||||||||| ||  |||||||||| ||||||||| | |||||||| || ||| ||| | |  ||||| ||||| |||||||||  ||||||||||    
T  3881729 cttatcatgcattgtgtcacctcctccaccttctctatcttatggaatggtaacaaa-atgccgcatttcaaacctacacatggcctccgacaaggtgat 3881827  T
Q  330 ccactctcaccatatcttttcattctttgtatggaaaa 367  Q
    || || || |  || || ||||||||||||||||||||    
T  3881828 ccgctttctctttacctcttcattctttgtatggaaaa 3881865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 233 - 373
Target Start/End: Original strand, 33803992 - 33804131
Alignment:
Q  233 atcatgcattgcgttgcctcctccactttctctatcctctggaatgggaaaaaagatgtctcccttcaagcctactcatggcctcatacaaggtgatcca 332  Q
    ||||||||||| ||| |||| || || | |||||| || |||||||| || ||| ||| |||| ||||||||| | ||  | |||| ||| ||||||||     
T  33803992 atcatgcattgtgtttcctcatctacatactctatactgtggaatggaaacaaa-atgcctcctttcaagccttcacacagtctcagacagggtgatcct 33804090  T
Q  333 ctctcaccatatcttttcattctttgtatggaaaaactctc 373  Q
    || ||||||||||| || |||||||||||||| ||||||||    
T  33804091 ctatcaccatatctctttattctttgtatggagaaactctc 33804131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 220 - 373
Target Start/End: Original strand, 48848175 - 48848327
Alignment:
Q  220 cacaaccaatcttatcatgcattgcgttgcctcctccactttctctatcctctggaatgggaaaaaagatgtctcccttcaagcctactcatggcctcat 319  Q
    ||||| |||||| ||||||||||| |||   || || |||||||| ||||||| |||||| ||| ||| || |||||||  | ||||||||||| ||||     
T  48848175 cacaatcaatctcatcatgcattgtgtttgttcttcaactttctccatcctctagaatgg-aaacaagttgcctccctttcatcctactcatgggctcag 48848273  T
Q  320 acaaggtgatccactctcaccatatcttttcattctttgtatggaaaaactctc 373  Q
    ||| |||||||| ||||| || || || || ||||| || |||||||| |||||    
T  48848274 acagggtgatccgctctccccttacctctttattctctgcatggaaaagctctc 48848327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 43 - 164
Target Start/End: Complemental strand, 24133568 - 24133445
Alignment:
Q  43 ctgccaggcagaagcacttctgacaatgccattgttttgcaggaaatcttttattttatgagaaggtctaaaat-aaaaagg-ttctgctgctttcaaac 140  Q
    |||||||| ||| | |||||||| ||||   ||||||||||||||||  || |||| |||||||| || ||||  ||||||| || |||| |||||||||    
T  24133568 ctgccaggtagaggtacttctgataatgttgttgttttgcaggaaataattcatttcatgagaagatcaaaaaagaaaaaggattttgctactttcaaac 24133469  T
Q  141 ttgatcttgagaaatcttttgata 164  Q
    |||||||||| ||| | |||||||    
T  24133468 ttgatcttgaaaaagcgtttgata 24133445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 29 - 89
Target Start/End: Original strand, 33803786 - 33803846
Alignment:
Q  29 accaaagcaactttctgccaggcagaagcacttctgacaatgccattgttttgcaggaaat 89  Q
    ||||||||| ||||||||| || ||  | |||||||| ||| |||||||||||||||||||    
T  33803786 accaaagcagctttctgcctggtaggggaacttctgataattccattgttttgcaggaaat 33803846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 5e-17; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 233 - 370
Target Start/End: Complemental strand, 17718491 - 17718355
Alignment:
Q  233 atcatgcattgcgttgcctcctccactttctctatcctctggaatgggaaaaaagatgtctcccttcaagcctactcatggcctcatacaaggtgatcca 332  Q
    ||||||||||| ||| |||| ||||| ||||||||  | |||||||| || ||| ||| |||||||||||||| ||||||| |||  ||| ||||||||     
T  17718491 atcatgcattgtgtttcctcatccaccttctctattttgtggaatggaaacaaa-atgcctcccttcaagccttctcatggtctctgacagggtgatcct 17718393  T
Q  333 ctctcaccatatcttttcattctttgtatggaaaaact 370  Q
    || || |||||||| || |||||||||||||| |||||    
T  17718392 ctttcgccatatctctttattctttgtatggagaaact 17718355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 233 - 370
Target Start/End: Complemental strand, 19019720 - 19019584
Alignment:
Q  233 atcatgcattgcgttgcctcctccactttctctatcctctggaatgggaaaaaagatgtctcccttcaagcctactcatggcctcatacaaggtgatcca 332  Q
    ||||||||||| ||| |||| ||||| ||||||||  | |||||||| || ||| ||| |||||||||||||| ||||||| |||  ||| ||||||||     
T  19019720 atcatgcattgtgtttcctcatccaccttctctattttgtggaatggaaacaaa-atgcctcccttcaagccttctcatggtctctgacagggtgatcct 19019622  T
Q  333 ctctcaccatatcttttcattctttgtatggaaaaact 370  Q
    || || |||||||| || |||||||||||||| |||||    
T  19019621 ctttcgccatatctctttattctttgtatggagaaact 19019584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 233 - 373
Target Start/End: Complemental strand, 53608433 - 53608294
Alignment:
Q  233 atcatgcattgcgttgcctcctccactttctctatcctctggaatgggaaaaaagatgtctcccttcaagcctactcatggcctcatacaaggtgatcca 332  Q
    ||||||||||| ||| ||||||| || |||||||| || |||||||| || ||| ||| || | |||| |||| | ||||| |||| ||| ||||||||     
T  53608433 atcatgcattgtgtttcctcctctaccttctctattctttggaatggaaacaaa-atgccttctttcaggccttcacatggtctcagacagggtgatcct 53608335  T
Q  333 ctctcaccatatcttttcattctttgtatggaaaaactctc 373  Q
    || || ||||| || || |||||||||||||| ||||||||    
T  53608334 ctatccccatacctctttattctttgtatggagaaactctc 53608294  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 321 - 385
Target Start/End: Complemental strand, 55024845 - 55024781
Alignment:
Q  321 caaggtgatccactctcaccatatcttttcattctttgtatggaaaaactctcaatttccatcaa 385  Q
    ||||||||||| ||||||||||| || |||||  | ||||||||||| ||||||||| |||||||    
T  55024845 caaggtgatccgctctcaccatacctcttcatcttatgtatggaaaagctctcaattgccatcaa 55024781  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 279 - 370
Target Start/End: Complemental strand, 15473534 - 15473443
Alignment:
Q  279 ggaaaaaagatgtctcccttcaagcctactcatggcctcatacaaggtgatccactctcaccatatcttttcattctttgtatggaaaaact 370  Q
    ||||| || ||| |||| |||||||| ||||||||||||  ||||||||| ||||| || ||||| |  ||||| ||||| |||||||||||    
T  15473534 ggaaacaaaatgcctcctttcaagcccactcatggcctccgacaaggtgacccactttctccataccaattcatactttgcatggaaaaact 15473443  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 29 - 177
Target Start/End: Complemental strand, 17718697 - 17718547
Alignment:
Q  29 accaaagcaactttctgccaggcagaagcacttctgacaatgccattgttttgcaggaaatcttttattttatgagaaggtcta--aaataaaaaggttc 126  Q
    ||||||||| ||||||||| || ||  | |||||||| ||  |||||||||||||||||||| || |||  |||||||| ||||  ||  |||||||||     
T  17718697 accaaagcagctttctgcctggtaggggaacttctgataactccattgttttgcaggaaatcattcattacatgagaagatctaagaagaaaaaaggtta 17718598  T
Q  127 tgctgctttcaaacttgatcttgagaaatcttttgatattttcaactggga 177  Q
    ||  |||||||| || || ||||||||| | ||||||| | |||| |||||    
T  17718597 tgtggctttcaagctagaccttgagaaagcctttgataatgtcaattggga 17718547  T

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Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 29 - 177
Target Start/End: Complemental strand, 19019926 - 19019776
Alignment:
Q  29 accaaagcaactttctgccaggcagaagcacttctgacaatgccattgttttgcaggaaatcttttattttatgagaaggtcta--aaataaaaaggttc 126  Q
    ||||||||| ||||||||| || ||  | |||||||| ||  |||||||||||||||||||| || |||  |||||||| ||||  ||  |||||||||     
T  19019926 accaaagcagctttctgcctggtaggggaacttctgataactccattgttttgcaggaaatcattcattacatgagaagatctaagaagaaaaaaggtta 19019827  T
Q  127 tgctgctttcaaacttgatcttgagaaatcttttgatattttcaactggga 177  Q
    ||  |||||||| || || ||||||||| | ||||||| | |||| |||||    
T  19019826 tgtggctttcaagctagaccttgagaaagcctttgataatgtcaattggga 19019776  T

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Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 297 - 367
Target Start/End: Original strand, 11897228 - 11897298
Alignment:
Q  297 ttcaagcctactcatggcctcatacaaggtgatccactctcaccatatcttttcattctttgtatggaaaa 367  Q
    ||||||||| |||||||||||  ||||||||||||  | || || ||||||||||| ||||| ||||||||    
T  11897228 ttcaagccttctcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaa 11897298  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 230 - 364
Target Start/End: Original strand, 50451909 - 50452042
Alignment:
Q  230 cttatcatgcattgcgttgcctcctccactttctctatcctctggaatgggaaaaaagatgtctcccttcaagcctactcatggcctcatacaaggtgat 329  Q
    |||||||||||||| ||  |||||||||||||||||||| | |||||||| || ||| ||| | |  ||||| ||||| |||||||||  ||||||||||    
T  50451909 cttatcatgcattgtgtcacctcctccactttctctatcttatggaatggtaacaaa-atgccgcatttcaaacctacacatggcctccgacaaggtgat 50452007  T
Q  330 ccactctcaccatatcttttcattctttgtatgga 364  Q
    || || || || || || |||||||||||||||||    
T  50452008 ccgctttctccttacctcttcattctttgtatgga 50452042  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 218 - 427
Target Start/End: Complemental strand, 50236713 - 50236505
Alignment:
Q  218 atcacaaccaatcttatcatgcattgcgttgcctcctccactttctctatcctctggaatgggaaaaaagatgtctcccttcaagcctactcatggcctc 317  Q
    ||||| ||||| || ||||||||||| ||  ||||  |||| | ||||||| | ||||| ||||| || |||| | || |||||||||||||||||||||    
T  50236713 atcaccaccaaactcatcatgcattgtgtctcctcacccacctactctatcttatggaacgggaacaa-gatgccccctttcaagcctactcatggcctc 50236615  T
Q  318 atacaaggtgatccactctcaccatatcttttcattctttgtatggaaaaactctcaatttccatcaacaacgttgtcctccaaggaaactgggaaccca 417  Q
    | | |||||||||| || || || || ||||||||  | |||||||| ||||| ||| || | || || || |||||||||||| | | |||||| || |    
T  50236614 agataaggtgatccgctttccccttaccttttcatcttgtgtatggagaaactatcagttgctattaataatgttgtcctccaaaggagctgggagccta 50236515  T
Q  418 tccacatcac 427  Q
    |||| |||||    
T  50236514 tccatatcac 50236505  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 297 - 427
Target Start/End: Complemental strand, 10103750 - 10103620
Alignment:
Q  297 ttcaagcctactcatggcctcatacaaggtgatccactctcaccatatcttttcattctttgtatggaaaaactctcaatttccatcaacaacgttgtcc 396  Q
    |||||||||||  |||| |||| |||||||| ||| ||||| || || || ||||| ||||| ||||| || ||||| ||| | |||||||| |  || |    
T  10103750 ttcaagcctacatatggtctcagacaaggtgttccgctctctccttacctattcatcctttgcatggagaagctctctattgctatcaacaatgcagtgc 10103651  T
Q  397 tccaaggaaactgggaacccatccacatcac 427  Q
      |||||||| |||||||| |||||||||||    
T  10103650 atcaaggaaattgggaacctatccacatcac 10103620  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 297 - 395
Target Start/End: Original strand, 23465427 - 23465527
Alignment:
Q  297 ttcaagcctactcatggcctcatacaaggtgatccactctcac--catatcttttcattctttgtatggaaaaactctcaatttccatcaacaacgttgt 394  Q
    ||||||||||||||||| ||   |||||||||||| || ||||  | ||||| |||||  | |||||||||||||||||| |  |||||||||| |||||    
T  23465427 ttcaagcctactcatggtcttcgacaaggtgatcctctttcacaccttatctcttcatcttgtgtatggaaaaactctcagtagccatcaacaatgttgt 23465526  T
Q  395 c 395  Q
    |    
T  23465527 c 23465527  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 233 - 427
Target Start/End: Original strand, 23945013 - 23945206
Alignment:
Q  233 atcatgcattgcgttgcctcctccactttctctatcctctggaatgggaaaaaagatgtctcccttcaagcctactcatggcctcatacaaggtgatcca 332  Q
    ||||||||||| ||| |||| || || | |||||| || |||||||| || ||| ||  |||| ||||||||| | || || |||| ||| ||||||||     
T  23945013 atcatgcattgtgtttcctcatctacatactctatactgtggaatggaaacaaa-attcctcctttcaagccttcacacggtctcagacagggtgatcct 23945111  T
Q  333 ctctcaccatatcttttcattctttgtatggaaaaactctcaatttccatcaacaacgttgtcctccaaggaaactgggaacccatccacatcac 427  Q
    || ||||||||||| || |||||||||||||| ||||||||  |  | |||||||||| |||  | |||||| | |||||||| ||||| |||||    
T  23945112 ctatcaccatatctctttattctttgtatggagaaactctctctcgctatcaacaacgctgtttttcaaggagattgggaaccaatccaaatcac 23945206  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 233 - 331
Target Start/End: Complemental strand, 5864888 - 5864791
Alignment:
Q  233 atcatgcattgcgttgcctcctccactttctctatcctctggaatgggaaaaaagatgtctcccttcaagcctactcatggcctcatacaaggtgatcc 331  Q
    ||||||||||| ||| ||| ||||||||||||||||||||  |||||| ||  |||||  ||  ||||||||||||||||| || | ||||||||||||    
T  5864888 atcatgcattgtgttaccttctccactttctctatcctctacaatggg-aacgagatgcttcagttcaagcctactcatggtctgagacaaggtgatcc 5864791  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 217 - 370
Target Start/End: Complemental strand, 6641165 - 6641013
Alignment:
Q  217 tatcacaaccaatcttatcatgcattgcgttgcctcctccactttctctatcctctggaatgggaaaaaagatgtctcccttcaagcctactcatggcct 316  Q
    |||||||| ||| ||||||||| |||| ||  ||||  |||||| |||| || | ||||| || || ||| ||||| || |||||||| |||||||||||    
T  6641165 tatcacaatcaagcttatcatgtattgtgtctcctcagccacttactctctcttatggaacggaaacaaa-atgtcccctttcaagcccactcatggcct 6641067  T
Q  317 catacaaggtgatccactctcaccatatcttttcattctttgtatggaaaaact 370  Q
    |  | |||||||||| ||||| || || || |||||| | || |||||||||||    
T  6641066 ccgaaaaggtgatccgctctctccctacctcttcattatgtgcatggaaaaact 6641013  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 29 - 89
Target Start/End: Original strand, 23944826 - 23944886
Alignment:
Q  29 accaaagcaactttctgccaggcagaagcacttctgacaatgccattgttttgcaggaaat 89  Q
    ||||||||| ||||||||| || ||  | |||||||| ||| |||||||||||||||||||    
T  23944826 accaaagcagctttctgcctggtaggggaacttctgataattccattgttttgcaggaaat 23944886  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 294 - 403
Target Start/End: Original strand, 26587301 - 26587410
Alignment:
Q  294 cccttcaagcctactcatggcctcatacaaggtgatccactctcaccatatcttttcattctttgtatggaaaaactctcaatttccatcaacaacgttg 393  Q
    ||||||||||||||||||||||||  ||||||||| ||| | || || || || ||||||||||||||||| ||||| ||  |  |||||||||| || |    
T  26587301 cccttcaagcctactcatggcctccgacaaggtgacccattgtctccctacctcttcattctttgtatggagaaactttctctggccatcaacaaagtcg 26587400  T
Q  394 tcctccaagg 403  Q
    |||| |||||    
T  26587401 tccttcaagg 26587410  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 58 - 107
Target Start/End: Original strand, 13030041 - 13030090
Alignment:
Q  58 acttctgacaatgccattgttttgcaggaaatcttttattttatgagaag 107  Q
    |||||| |||||| |||| |||||||||||||| || |||||||||||||    
T  13030041 acttctaacaatgtcattattttgcaggaaatcattcattttatgagaag 13030090  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 297 - 364
Target Start/End: Complemental strand, 24990736 - 24990669
Alignment:
Q  297 ttcaagcctactcatggcctcatacaaggtgatccactctcaccatatcttttcattctttgtatgga 364  Q
    |||||||| || ||||| |||| ||||||||| || ||||| || ||||||||||||||||| |||||    
T  24990736 ttcaagcccacccatggtctcagacaaggtgacccgctctctccttatcttttcattctttgcatgga 24990669  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 233 - 367
Target Start/End: Complemental strand, 24893972 - 24893839
Alignment:
Q  233 atcatgcattgcgttgcctcctccactttctctatcctctggaatgggaaaaaagatgtctcccttcaagcctactcatggcctcatacaaggtgatcca 332  Q
    ||||||||||| ||  |||||||||| ||||| ||  | |||||||| || ||| ||| | || |||||||| || ||||| |||| ||||||||| ||     
T  24893972 atcatgcattgtgtcacctcctccacattctccatattatggaatggtaacaaa-atgccccctttcaagcccacacatggtctcagacaaggtgacccg 24893874  T
Q  333 ctctcaccatatcttttcattctttgtatggaaaa 367  Q
    ||||| || ||||||||||| || || ||||||||    
T  24893873 ctctctccttatcttttcatactatgcatggaaaa 24893839  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 348 - 418
Target Start/End: Complemental strand, 27852974 - 27852904
Alignment:
Q  348 ttcattctttgtatggaaaaactctcaatttccatcaacaacgttgtcctccaaggaaactgggaacccat 418  Q
    ||||| |||||||||||||| ||||| ||| |||||||||| ||||| || ||||| || ||||| |||||    
T  27852974 ttcatcctttgtatggaaaagctctccattgccatcaacaaggttgttcttcaaggcaattgggaccccat 27852904  T

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Target: scaffold0036 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 295 - 373
Target Start/End: Original strand, 75982 - 76060
Alignment:
Q  295 ccttcaagcctactcatggcctcatacaaggtgatccactctcaccatatcttttcattctttgtatggaaaaactctc 373  Q
    ||||||||||||||||||| |||| ||||||||| |   | || || ||||||||||| ||||| |||||||| |||||    
T  75982 ccttcaagcctactcatggtctcagacaaggtgaccagttgtccccttatcttttcatcctttgcatggaaaagctctc 76060  T

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Target: scaffold0214 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0214
Description:

Target: scaffold0214; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 233 - 370
Target Start/End: Original strand, 8981 - 9117
Alignment:
Q  233 atcatgcattgcgttgcctcctccactttctctatcctctggaatgggaaaaaagatgtctcccttcaagcctactcatggcctcatacaaggtgatcca 332  Q
    ||||||||||||||| |||| ||||  |||||||| || |||||||| || |  | || |||| ||| ||||| ||||||||||||  || |||||||||    
T  8981 atcatgcattgcgttacctcatccagattctctattctttggaatggtaatag-gctgcctcctttcgagccttctcatggcctcacgcagggtgatcca 9079  T
Q  333 ctctcaccatatcttttcattctttgtatggaaaaact 370  Q
    || || || || ||||| || ||||| ||||| |||||    
T  9080 ctttccccgtacctttttatactttgcatggagaaact 9117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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