View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13876_low_17 (Length: 442)

Name: NF13876_low_17
Description: NF13876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13876_low_17
NF13876_low_17
[»] chr4 (2 HSPs)
chr4 (185-427)||(6662048-6662300)
chr4 (83-200)||(6662490-6662607)
[»] chr5 (2 HSPs)
chr5 (358-427)||(26708201-26708270)
chr5 (358-427)||(26977935-26978004)
[»] chr2 (2 HSPs)
chr2 (389-425)||(10945639-10945675)
chr2 (389-425)||(10939770-10939806)
[»] chr6 (1 HSPs)
chr6 (389-425)||(24043299-24043335)
[»] chr1 (1 HSPs)
chr1 (389-425)||(49389252-49389288)
[»] chr7 (2 HSPs)
chr7 (280-327)||(31208365-31208412)
chr7 (393-425)||(13817476-13817508)
[»] chr3 (1 HSPs)
chr3 (388-416)||(14656377-14656405)


Alignment Details
Target: chr4 (Bit Score: 142; Significance: 2e-74; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 185 - 427
Target Start/End: Complemental strand, 6662300 - 6662048
Alignment:
Q  185 tatatattaaattgatatgttcactttaattctgtttgaatatattttgttgtggggtatataatacgcactttgtga----------tgtatattaata 274  Q
    |||| |||||||||||||| ||||||||||| ||||||||||| ||||||||||||| ||||||||||||||||| ||          ||||||||||||    
T  6662300 tataaattaaattgatatgctcactttaattttgtttgaatatcttttgttgtggggaatataatacgcactttgagaatcttgtgtttgtatattaata 6662201  T
Q  275 catagtttgagcatgtttattttattgtaaaatattatttaattatatcattgacaacaaaactgagaaactcatagagttacatgcgttagtgaaacaa 374  Q
    ||||||||||| |||||||||||||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||  ||||||| || ||||||||||||    
T  6662200 catagtttgagtatgtttattttattgtgaaatattatttaattatattattgataacaaaattgagaaactcatgaagttacaagcattagtgaaacaa 6662101  T
Q  375 gtgtaattaaaacgttgtcgcttagaaataatctaagtagacctgaatatatt 427  Q
    |||||||||| | ||||||| ||||||||||| ||||||||||||||||||||    
T  6662100 gtgtaattaagatgttgtcgtttagaaataatataagtagacctgaatatatt 6662048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 83 - 200
Target Start/End: Complemental strand, 6662607 - 6662490
Alignment:
Q  83 agtgatataaattcgattcagaatgtgtacaggtttgatatgcttgttaactaannnnnnnngtgaccctatatttaaaatataaaacttgaattctgtg 182  Q
    |||||||||||||| | ||||||||||||||||||||||||||||||||||| |         ||||||||||| |||||||||||||||||||| ||||    
T  6662607 agtgatataaattctaatcagaatgtgtacaggtttgatatgcttgttaactgaatatttttatgaccctatatataaaatataaaacttgaattttgtg 6662508  T
Q  183 ggtatatattaaattgat 200  Q
    |||||| |||||||||||    
T  6662507 ggtataaattaaattgat 6662490  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 358 - 427
Target Start/End: Complemental strand, 26708270 - 26708201
Alignment:
Q  358 atgcgttagtgaaacaagtgtaattaaaacgttgtcgcttagaaataatctaagtagacctgaatatatt 427  Q
    |||| ||||| ||||||||||||   | | |||||||||||||||||||||||||||| |||||||||||    
T  26708270 atgcattagtaaaacaagtgtaagagagatgttgtcgcttagaaataatctaagtagatctgaatatatt 26708201  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 358 - 427
Target Start/End: Complemental strand, 26978004 - 26977935
Alignment:
Q  358 atgcgttagtgaaacaagtgtaattaaaacgttgtcgcttagaaataatctaagtagacctgaatatatt 427  Q
    |||| ||||| ||||||||||||   | | |||||||||||||||||||||||||||| |||||||||||    
T  26978004 atgcattagtaaaacaagtgtaagagagatgttgtcgcttagaaataatctaagtagatctgaatatatt 26977935  T

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Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 389 - 425
Target Start/End: Complemental strand, 10945675 - 10945639
Alignment:
Q  389 ttgtcgcttagaaataatctaagtagacctgaatata 425  Q
    |||||||||||||||||||||||||||||||||||||    
T  10945675 ttgtcgcttagaaataatctaagtagacctgaatata 10945639  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 389 - 425
Target Start/End: Complemental strand, 10939806 - 10939770
Alignment:
Q  389 ttgtcgcttagaaataatctaagtagacctgaatata 425  Q
    ||||||||||||||||||||||||||| |||||||||    
T  10939806 ttgtcgcttagaaataatctaagtagatctgaatata 10939770  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 389 - 425
Target Start/End: Complemental strand, 24043335 - 24043299
Alignment:
Q  389 ttgtcgcttagaaataatctaagtagacctgaatata 425  Q
    ||||||||||||||||||||||||||| |||||||||    
T  24043335 ttgtcgcttagaaataatctaagtagatctgaatata 24043299  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 389 - 425
Target Start/End: Complemental strand, 49389288 - 49389252
Alignment:
Q  389 ttgtcgcttagaaataatctaagtagacctgaatata 425  Q
    |||||||||||||||||||||||||||| ||||||||    
T  49389288 ttgtcgcttagaaataatctaagtagacttgaatata 49389252  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 280 - 327
Target Start/End: Complemental strand, 31208412 - 31208365
Alignment:
Q  280 tttgagcatgtttattttattgtaaaatattatttaattatatcattg 327  Q
    |||||| || ||||||||||||| ||||||||||||||||||| ||||    
T  31208412 tttgagaatttttattttattgtgaaatattatttaattatattattg 31208365  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 393 - 425
Target Start/End: Original strand, 13817476 - 13817508
Alignment:
Q  393 cgcttagaaataatctaagtagacctgaatata 425  Q
    ||||||||||||||||||||||| |||||||||    
T  13817476 cgcttagaaataatctaagtagatctgaatata 13817508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 388 - 416
Target Start/End: Original strand, 14656377 - 14656405
Alignment:
Q  388 gttgtcgcttagaaataatctaagtagac 416  Q
    |||||||||||||||||||||||||||||    
T  14656377 gttgtcgcttagaaataatctaagtagac 14656405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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