View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13876_low_18 (Length: 432)
Name: NF13876_low_18
Description: NF13876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13876_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 369; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 21 - 417
Target Start/End: Complemental strand, 6145711 - 6145315
Alignment:
| Q |
21 |
ggaaatgatcccaaaatgtttcttgtgatgaagacatgttgacattgtcttgatgaagatgaaaaggaggaggaaaagtgcgtcttctgcttgagctttc |
120 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
6145711 |
ggaaatgatcccaaaatgtttcttgtgatgaagacatgttgacattgtcttgatgaagatgaaaaggaggaggaaaagtgtgtcttctgcttgagctttc |
6145612 |
T |
|
| Q |
121 |
gtcaacttgtgaaccttgattagaagtttcagctctagtgaatggatcaggtgatctcctccccttgaacaatgaattagcacgaaacaagtcatcattc |
220 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |
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| T |
6145611 |
gtcaacttgtgaaccttgattagaagtttcacctctagtgaatggatcaggtgatctcctcctcttgaacaatgaattagcacgaaacaactcatcattc |
6145512 |
T |
|
| Q |
221 |
ctagtaccaatagtagtggtgttagttccatcgttgaatgacgaaatggaattcacattactattgtttcgtgcaacaactccacttcttggataatcag |
320 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
6145511 |
ctagtaccaatagtagtggtgttagttccatcgttgaatgacgaaatggaattcacattactattgtttcctgcaacaactccacttcttggataatcag |
6145412 |
T |
|
| Q |
321 |
atcttgcagcaagttcagtaggtccagctccagtttgtcctccaatagtcggggtggacgacaaacttcttgatcctccattgataatgcgaatatt |
417 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
6145411 |
atcttgcagcaggttcagtaggtccagctccagtttgtcctccaatagtcggggtggacgacagacttcttgatcctccattgataatgcgaatatt |
6145315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 28 - 402
Target Start/End: Complemental strand, 6126288 - 6125911
Alignment:
| Q |
28 |
atcccaaaatgtttcttgtgat---gaagacatgttgacattgtcttgatgaagatgaaaaggaggaggaaaagtgcgtcttctgcttgagctttcgtca |
124 |
Q |
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|||||||||||||||||| | | |||||| ||||||||||||||||||||| ||||||||||||||||| ||||||||||||| |||||||| |||| |
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| T |
6126288 |
atcccaaaatgtttcttgcggtaaagaagacgtgttgacattgtcttgatgaatatgaaaaggaggaggaagagtgcgtcttctgattgagcttctgtca |
6126189 |
T |
|
| Q |
125 |
acttgtgaaccttgattagaagtttcagctctagtgaatggatcaggtgatctcctccccttgaacaatgaattagcacgaaacaagtcatcattcctag |
224 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| |||||||||| |||||||| | | ||| ||||||||||||||||||||||| ||||||||||||| |
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| T |
6126188 |
acttgtgaaccttgattagaagtttcacctctaatgaatggatcgggtgatctatttctctttaacaatgaattagcacgaaacaactcatcattcctag |
6126089 |
T |
|
| Q |
225 |
taccaatagtagtggtgttagttccatcgttgaatgacgaaatggaattcacattactattgtttcgtgcaacaactccacttcttggataatcagatct |
324 |
Q |
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||||||||||| |||||||| || ||||||||||||||||||||||||||||||||||||| |||| | |||||| | |||||||| |||||| ||||| |
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| T |
6126088 |
taccaatagtaatggtgttaatttcatcgttgaatgacgaaatggaattcacattactattatttcctccaacaaatgcacttctttgataattagatcc |
6125989 |
T |
|
| Q |
325 |
tgcagcaagttcagtaggtccagctccagtttgtcctccaatagtcggggtggacgacaaacttcttgatcctccatt |
402 |
Q |
| |
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| ||||| |||||||| ||| ||||||||||| |||||| |||||| || |||||| || |||||| |||||| |||| |
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| T |
6125988 |
tccagcaggttcagtaagtctagctccagtttatcctccgatagtcaggatggacggcacacttctcgatccttcatt |
6125911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 121 - 417
Target Start/End: Complemental strand, 6152031 - 6151735
Alignment:
| Q |
121 |
gtcaacttgtgaaccttgattagaagtttcagctctagtgaatggatcaggtgatctcctccccttgaacaatgaattagcacgaaacaagtcatcattc |
220 |
Q |
| |
|
|||||||||| |||||||||||||||||||| ||||||| ||||||||| ||||||| || | ||| ||| |||| ||||||||||||| |||||||| |
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|
| T |
6152031 |
gtcaacttgtaaaccttgattagaagtttcacctctagttaatggatcatgtgatctacttctctttaaccgtgaactagcacgaaacaactcatcattt |
6151932 |
T |
|
| Q |
221 |
ctagtaccaatagtagtggtgttagttccatcgttgaatgacgaaatggaattcacattactattgtttcgtgcaacaactccacttcttggataatcag |
320 |
Q |
| |
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||||||||| ||| ||||| |||| |||||||| ||||||| ||||||||||||||||||||| |||||| ||||||||||||||||||| || |||||| |
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|
| T |
6151931 |
ctagtaccagtagcagtggggttaattccatcgctgaatgatgaaatggaattcacattactactgtttcctgcaacaactccacttctttgaaaatcag |
6151832 |
T |
|
| Q |
321 |
atcttgcagcaagttcagtaggtccagctccagtttgtcctccaatagtcggggtggacgacaaacttcttgatcctccattgataatgcgaatatt |
417 |
Q |
| |
|
||| |||| || |||||||||||| |||||||||||||||||||||| |||| || || | | | |||| | ||||||||||||||||| |||||| |
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|
| T |
6151831 |
atcctgcaacaggttcagtaggtctagctccagtttgtcctccaataaccgggatgaacaatacaattctgggtcctccattgataatgctaatatt |
6151735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 59 - 318
Target Start/End: Original strand, 33802841 - 33803100
Alignment:
| Q |
59 |
ttgacattgtcttgatgaagatgaaaaggaggaggaaaagtgcgtcttctgcttgagctttcgtcaacttgtgaaccttgattagaagtttcagctctag |
158 |
Q |
| |
|
|||||||||||||||| | |||||||||||||||||| ||||||||||||||| | ||||| |||| ||||||||||||||||||||||||| |||||| |
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| T |
33802841 |
ttgacattgtcttgataaggatgaaaaggaggaggaagagtgcgtcttctgctaaacctttcatcaatttgtgaaccttgattagaagtttcacctctag |
33802940 |
T |
|
| Q |
159 |
tgaatggatcaggtgatctcctccccttgaacaatgaattagcacgaaacaagtcatcattcctagtaccaatagtagtggtgttagttccatcgttgaa |
258 |
Q |
| |
|
||||||||||||| ||||| || | |||||| |||||||||| || |||| ||||||||||||| |||| |||||||||||||| || |||||||||| |
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| T |
33802941 |
tgaatggatcaggcgatctacttctcttgaatgatgaattagcctgacacaactcatcattcctagcaccagtagtagtggtgttaatttcatcgttgaa |
33803040 |
T |
|
| Q |
259 |
tgacgaaatggaattcacattactattgtttcgtgcaacaactccacttcttggataatc |
318 |
Q |
| |
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|||||||| |||||| |||||||| | |||| | ||||| ||||||||||| ||||||| |
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|
| T |
33803041 |
tgacgaaacggaattagcattactactatttcctacaacatctccacttctttgataatc |
33803100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 59 - 318
Target Start/End: Original strand, 33731462 - 33731721
Alignment:
| Q |
59 |
ttgacattgtcttgatgaagatgaaaaggaggaggaaaagtgcgtcttctgcttgagctttcgtcaacttgtgaaccttgattagaagtttcagctctag |
158 |
Q |
| |
|
|||||||||||||||| | |||||||||||||||||| |||| |||||||||| | ||||| |||| |||||||||||||||||||||||| |||||| |
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| T |
33731462 |
ttgacattgtcttgataaggatgaaaaggaggaggaagagtgtgtcttctgctaaacctttcatcaatttgtgaaccttgattagaagtttcccctctag |
33731561 |
T |
|
| Q |
159 |
tgaatggatcaggtgatctcctccccttgaacaatgaattagcacgaaacaagtcatcattcctagtaccaatagtagtggtgttagttccatcgttgaa |
258 |
Q |
| |
|
||||||||||||| ||||| || | |||||| |||||||||| || |||| ||||||||||||| |||| |||||||||||||| || |||||||||| |
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|
| T |
33731562 |
tgaatggatcaggcgatctacttctcttgaatgatgaattagcctgacacaactcatcattcctagcaccagtagtagtggtgttaatttcatcgttgaa |
33731661 |
T |
|
| Q |
259 |
tgacgaaatggaattcacattactattgtttcgtgcaacaactccacttcttggataatc |
318 |
Q |
| |
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|||||||| ||||| |||||||| | |||| | ||||| ||||||||||| ||||||| |
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|
| T |
33731662 |
tgacgaaacagaattagcattactactatttcctacaacatctccacttctttgataatc |
33731721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 46 - 205
Target Start/End: Complemental strand, 6138634 - 6138475
Alignment:
| Q |
46 |
tgatgaagacatgttgacattgtcttgatgaagatgaaaaggaggaggaaaagtgcgtcttctgcttgagctttcgtcaacttgtgaaccttgattagaa |
145 |
Q |
| |
|
|||||| ||||||||||| |||||||||||| ||||||| || ||||| |||||||||||| || || | ||| ||| | |||||||||||| |||| |
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|
| T |
6138634 |
tgatgacgacatgttgacgttgtcttgatgagtatgaaaaaaagaaggaagagtgcgtcttctactagaaccttcatcaccctgtgaaccttgagcagaa |
6138535 |
T |
|
| Q |
146 |
gtttcagctctagtgaatggatcaggtgatctcctccccttgaacaatgaattagcacga |
205 |
Q |
| |
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|||||| ||||| | |||| || |||||||| || | ||| |||||| ||||||||||| |
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|
| T |
6138534 |
gtttcacctctatttaatgcatttggtgatctgcttctctttaacaataaattagcacga |
6138475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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