View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13876_low_19 (Length: 430)
Name: NF13876_low_19
Description: NF13876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13876_low_19 |
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Alignment Details
Target: chr7 (Bit Score: 290; Significance: 1e-162; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 1 - 414
Target Start/End: Original strand, 26949389 - 26949801
Alignment:
| Q |
1 |
atacacttattcaacatattattctctctttatatatttctctttctatcacatcaataacatattacattactctgcattatctttttatctctcaaaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| |
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| T |
26949389 |
atacacttattcaacatattattctctctttatatatatctctttctatcacatcaacaacatattacattactctacattatctttttatctctcaaaa |
26949488 |
T |
|
| Q |
101 |
tgtcaaatggtttttgatgtttatcaatcttttttctatcaaacaatgtctttgcatgccctcttggtttaaaaagaaaataatcacaaaagacttttaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |
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| T |
26949489 |
tgtcaaatggtttttgatgtttatcaatcttttttctatcaagcaatgtctttgcatgccctcttggtttaaaaagaaaatagtcccaaaagacttttaa |
26949588 |
T |
|
| Q |
201 |
caagtaagtatatttcaagnnnnnnntaggagattggatagttcaattggtttgagttaagttataaaaagtccgtaaattatgagttcaaactaagaca |
300 |
Q |
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| T |
26949589 |
caagtaagtatatttgaagaaaaaaataggagattggatagttcaattgatttgagttaagttataaaaagtctgtaaattatgagttcaaaccaagaca |
26949688 |
T |
|
| Q |
301 |
tatgcgaaaaattaatttaacaactaattactaacattgtacaattnnnnnnnnnnnnnnnnntaaagttaattagtttcatattgactatactattaaa |
400 |
Q |
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|||| | ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
26949689 |
tatgag-aaaattaatttaacaactaattactaacattgtacaattaaaaaaattgaaaaaaataaagttaattagtttcatattgactatactattaaa |
26949787 |
T |
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| Q |
401 |
ctcaatgattaagc |
414 |
Q |
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| T |
26949788 |
ctcaatgattaagc |
26949801 |
T |
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Back To:
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Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 305 - 338
Target Start/End: Complemental strand, 37322444 - 37322411
Alignment:
| Q |
305 |
cgaaaaattaatttaacaactaattactaacatt |
338 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
37322444 |
cgaaaaattaatttaacaactaattactaacatt |
37322411 |
T |
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