View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13876_low_2 (Length: 891)

Name: NF13876_low_2
Description: NF13876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13876_low_2
NF13876_low_2
[»] chr7 (7 HSPs)
chr7 (20-515)||(24945378-24945874)
chr7 (565-867)||(24945924-24946229)
chr7 (20-227)||(24942245-24942441)
chr7 (227-368)||(24942473-24942613)
chr7 (235-319)||(38622870-38622954)
chr7 (238-303)||(39417751-39417816)
chr7 (246-328)||(23117341-23117423)
[»] chr6 (2 HSPs)
chr6 (231-309)||(34881695-34881773)
chr6 (231-328)||(33532473-33532570)
[»] chr4 (2 HSPs)
chr4 (231-320)||(39305799-39305888)
chr4 (264-328)||(34581594-34581658)
[»] chr5 (2 HSPs)
chr5 (248-313)||(11257727-11257792)
chr5 (264-314)||(7430133-7430183)
[»] chr1 (2 HSPs)
chr1 (235-319)||(43391525-43391609)
chr1 (265-328)||(6025952-6026015)
[»] chr8 (2 HSPs)
chr8 (265-328)||(41931066-41931129)
chr8 (265-319)||(3644524-3644578)
[»] chr3 (1 HSPs)
chr3 (267-309)||(2990983-2991025)


Alignment Details
Target: chr7 (Bit Score: 477; Significance: 0; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 20 - 515
Target Start/End: Original strand, 24945378 - 24945874
Alignment:
Q  20 ttaactacatgatgaagcataaagaatgtacaattcaaaatgaaatgatcctgaagtaagaaaatcaagcatcttcactcttcagcatcttcttgatcag 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24945378 ttaactacatgatgaagcataaagaatgtacaattcaaaatgaaatgatcctgaagtaagaaaatcaagcatcttcactcttcagcatcttcttgatcag 24945477  T
Q  120 gcgagtagaggcttccatcaggccccatcaccttatacctacacaatataaagcacataatctaatcaaaatgtggaataatgaatgattccttctccta 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24945478 gcgagtagaggcttccatcaggccccatcaccttatacctacacaatataaagcacataatctaatcaaaatgtggaataatgaatgattccttctccta 24945577  T
Q  220 tccgcattaggagcactatagcataacagaatatgaacagatcactattgttccacgatacgctaactagcacaaaatgttgtcaaatagcggctgtagc 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24945578 tccgcattaggagcactatagcataacagaatatgaacagatcactattgttccacgatacgctaactagcacaaaatgttgtcaaatagcggctgtagc 24945677  T
Q  320 ggcgctatactctgctatgtcgaggaattatatttcgcaatcagtgattgacaaccctgccacccatgttaataactcgag-taaaaagctaaattaaaa 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||  |||||||||||||||||    
T  24945678 ggcgctatactctgctatgtcgaggaattatatttcgcaatcagtgattgacaacactgccacccatgttaataactcgagacaaaaagctaaattaaaa 24945777  T
Q  419 gcaaccgatttggcctaaacattgttaattaactgattacctttcaaggataaactttccttctttgtacttctgattcttctcagaagcagcctcc 515  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24945778 gcaaccgatttggcctaaaaattgttaattaactgattacctttcaaggataaactttccttctttgtacttctgattcttctcagaagcagcctcc 24945874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 247; E-Value: 1e-136
Query Start/End: Original strand, 565 - 867
Target Start/End: Original strand, 24945924 - 24946229
Alignment:
Q  565 ccatgagattcaagaactggtccttacatatttccacccaacaatggacccacatgtaacacagaatatgtcgacgacagtgtgccatcctgtgatcatc 664  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24945924 ccatgagattcaagaactggtccttacatatttccacccaacaatggacccacatgtaacacagaatatgtcgacgacagtgtgccatcctgtgatcatc 24946023  T
Q  665 atccgttcttctttttctccgatggtgacattcacactgtcataacattgattaaagagatgttatttgcaggactcatcttacaaaaccaagtttaaag 764  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| ||||||||||||||| || ||||| |||||    
T  24946024 atccgttcttctttttctccgatggtgacattcacactgtcataacatggattgaagagatgttatttgtaggactcatcttacacaaacaagtctaaag 24946123  T
Q  765 gtgggatagagtttctaatgccatccaatagtagcaattgcacgattggtacataaacataccgcaaacatatcagtatta--atttttgg-tagaataa 861  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| |||||||  |||||||| ||||||||    
T  24946124 gtgggatagagtttctaatgccatccaatagtagcaattgcatgattggtacgtaaacataccgcaaacatataagtattactatttttggatagaataa 24946223  T
Q  862 gcatta 867  Q
    | ||||    
T  24946224 gtatta 24946229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 126; E-Value: 2e-64
Query Start/End: Original strand, 20 - 227
Target Start/End: Original strand, 24942245 - 24942441
Alignment:
Q  20 ttaactacatgatgaagcataaagaatgtacaattcaaaatgaaatgatcctgaagtaagaaaatcaagcatcttcactcttcagcatcttcttgatcag 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||            |||||||||||||||||||||||||||||||||||||    
T  24942245 ttaactacatgatgaagcataaagaatgtacaattcaaaatgaaatggtccc-----------atcaagcatcttcactcttcagcatcttcttgatcag 24942333  T
Q  120 gcgagtagaggcttccatcaggccccatcaccttatacctacacaatataaagcacataatctaatcaaaatgtggaataatgaatgattccttctccta 219  Q
     | |||||||||||| ||||||||||||||||||| ||||||| ||||||||| |||  |||||||||||||| ||||||||||||||||||||||||||    
T  24942334 ccaagtagaggcttcaatcaggccccatcaccttacacctacaaaatataaagtacacgatctaatcaaaatgcggaataatgaatgattccttctccta 24942433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 110; E-Value: 6e-55
Query Start/End: Original strand, 227 - 368
Target Start/End: Original strand, 24942473 - 24942613
Alignment:
Q  227 taggagcactatagcataacagaatatgaacagatcactattgttccacgatacgctaactagcacaaaatgttgtcaaatagcggctgtagcggcgcta 326  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| ||| |||||||||||||||||||| |||||||||||||||    
T  24942473 taggagcactatagcataacagaatatgaacagatcgctattgttccatgatacgctaattagtacaaaatgttgtcaaatagcagctgtagcggcgcta 24942572  T
Q  327 tactctgctatgtcgaggaattatatttcgcaatcagtgatt 368  Q
    |||||||||| ||||||||||||| |||||||||||||||||    
T  24942573 tactctgctacgtcgaggaattat-tttcgcaatcagtgatt 24942613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 235 - 319
Target Start/End: Complemental strand, 38622954 - 38622870
Alignment:
Q  235 ctatagcataacagaatatgaacagatcactattgttccacgatacgctaactagcacaaaatgttgtcaaatagcggctgtagc 319  Q
    ||||||| || |||||| |||| | |||  |||||||||| ||||| |||  |||||||||||||||||||||||||||| ||||    
T  38622954 ctatagcgtagcagaatttgaataaatcgatattgttccatgatacactatttagcacaaaatgttgtcaaatagcggctatagc 38622870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 238 - 303
Target Start/End: Original strand, 39417751 - 39417816
Alignment:
Q  238 tagcataacagaatatgaacagatcactattgttccacgatacgctaactagcacaaaatgttgtc 303  Q
    |||| ||||||||| |||||| |||||||||||||| ||||| ||||  ||| |||||||||||||    
T  39417751 tagcgtaacagaatttgaacaaatcactattgttccgcgatatgctatatagtacaaaatgttgtc 39417816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 246 - 328
Target Start/End: Complemental strand, 23117423 - 23117341
Alignment:
Q  246 cagaatatgaacagatcactattgttccacgatacgctaactagcacaaaatgttgtcaaatagcggctgtagcggcgctata 328  Q
    |||||| |||||| ||| ||||| ||||| |||| ||||  |||||||||||||||| |||||| || | |||| ||||||||    
T  23117423 cagaatttgaacaaatcgctatttttccatgatatgctatttagcacaaaatgttgtgaaatagtgggtatagcagcgctata 23117341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 231 - 309
Target Start/End: Original strand, 34881695 - 34881773
Alignment:
Q  231 agcactatagcataacagaatatgaacagatcactattgttccacgatacgctaactagcacaaaatgttgtcaaatag 309  Q
    ||||||||| |||| | ||||||||||| |||||||| ||||||||||||||||  ||| ||||| | |||||||||||    
T  34881695 agcactataacatagcggaatatgaacaaatcactatcgttccacgatacgctatttagtacaaagtcttgtcaaatag 34881773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 231 - 328
Target Start/End: Complemental strand, 33532570 - 33532473
Alignment:
Q  231 agcactatagcataacagaatatgaacagatcactattgttccacgatacgctaactagcacaaaatgttgtcaaatagcggctgtagcggcgctata 328  Q
    ||||||||||| ||||||||| |||||| ||| | |||||| ||| ||||||||  ||| ||| |||||||||||| ||| ||| |||  ||||||||    
T  33532570 agcactatagcgtaacagaatttgaacaaatcgccattgttacactatacgctatttagtacagaatgttgtcaaacagcagctatagttgcgctata 33532473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 231 - 320
Target Start/End: Original strand, 39305799 - 39305888
Alignment:
Q  231 agcactatagcataacagaatatgaacagatcactattgttccacgatacgctaactagcacaaaatgttgtcaaatagcggctgtagcg 320  Q
    |||||||| ||||| |||||| |||||| ||||||||||||||||||| |||||  ||| ||| ||| |||| |||||| |||| |||||    
T  39305799 agcactattgcatagcagaatttgaacatatcactattgttccacgattcgctatttagtacagaatattgtgaaatagtggctatagcg 39305888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 264 - 328
Target Start/End: Original strand, 34581594 - 34581658
Alignment:
Q  264 ctattgttccacgatacgctaactagcacaaaatgttgtcaaatagcggctgtagcggcgctata 328  Q
    ||||||||||  |||||||||  ||| |||||||||||||||||||||||| |||  ||||||||    
T  34581594 ctattgttccgtgatacgctatttagtacaaaatgttgtcaaatagcggctatagtagcgctata 34581658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 248 - 313
Target Start/End: Original strand, 11257727 - 11257792
Alignment:
Q  248 gaatatgaacagatcactattgttccacgatacgctaactagcacaaaatgttgtcaaatagcggc 313  Q
    ||||||||||| ||| ||||||||  |||||| ||||  ||| |||||||||||||||||||||||    
T  11257727 gaatatgaacaaatcgctattgttatacgatatgctatttagtacaaaatgttgtcaaatagcggc 11257792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 264 - 314
Target Start/End: Original strand, 7430133 - 7430183
Alignment:
Q  264 ctattgttccacgatacgctaactagcacaaaatgttgtcaaatagcggct 314  Q
    |||||||||||| ||||||||  ||| |||| |||||||||||||||||||    
T  7430133 ctattgttccacaatacgctatttagtacaagatgttgtcaaatagcggct 7430183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 235 - 319
Target Start/End: Complemental strand, 43391609 - 43391525
Alignment:
Q  235 ctatagcataacagaatatgaacagatcactattgttccacgatacgctaactagcacaaaatgttgtcaaatagcggctgtagc 319  Q
    |||||||||  |||||| |||||| ||| |||||||||| |||| | |||  ||| ||||||||||||||||| |||||| ||||    
T  43391609 ctatagcatggcagaatttgaacaaatcgctattgttccccgatgcactatttagtacaaaatgttgtcaaatggcggctatagc 43391525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 265 - 328
Target Start/End: Complemental strand, 6026015 - 6025952
Alignment:
Q  265 tattgttccacgatacgctaactagcacaaaatgttgtcaaatagcggctgtagcggcgctata 328  Q
    ||||||||| ||||| ||||  ||| ||||||||||||||||||| |||| |||| ||||||||    
T  6026015 tattgttccgcgatatgctatttagtacaaaatgttgtcaaatagtggctatagcagcgctata 6025952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 265 - 328
Target Start/End: Original strand, 41931066 - 41931129
Alignment:
Q  265 tattgttccacgatacgctaactagcacaaaatgttgtcaaatagcggctgtagcggcgctata 328  Q
    ||||||||||||||| ||||  ||| ||||||| |||||||| | ||||||||||||| |||||    
T  41931066 tattgttccacgataagctatttagtacaaaatattgtcaaacaacggctgtagcggcactata 41931129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 265 - 319
Target Start/End: Complemental strand, 3644578 - 3644524
Alignment:
Q  265 tattgttccacgatacgctaactagcacaaaatgttgtcaaatagcggctgtagc 319  Q
    ||||||||||| ||||||||  || |||||| |||||||||||||||||| ||||    
T  3644578 tattgttccacaatacgctatttaccacaaattgttgtcaaatagcggctatagc 3644524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 267 - 309
Target Start/End: Complemental strand, 2991025 - 2990983
Alignment:
Q  267 ttgttccacgatacgctaactagcacaaaatgttgtcaaatag 309  Q
    ||||||||||||||||||  ||| |||||||||||||||||||    
T  2991025 ttgttccacgatacgctatttagtacaaaatgttgtcaaatag 2990983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University