View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13876_low_20 (Length: 419)

Name: NF13876_low_20
Description: NF13876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13876_low_20
NF13876_low_20
[»] chr3 (5 HSPs)
chr3 (10-403)||(33456128-33456511)
chr3 (121-204)||(44625463-44625546)
chr3 (91-205)||(42908921-42909035)
chr3 (114-184)||(33381734-33381804)
chr3 (213-273)||(9107211-9107272)
[»] chr4 (1 HSPs)
chr4 (94-204)||(51521199-51521314)
[»] chr7 (2 HSPs)
chr7 (209-273)||(3412267-3412331)
chr7 (114-173)||(27922397-27922455)
[»] chr8 (1 HSPs)
chr8 (91-158)||(11872595-11872661)
[»] chr1 (1 HSPs)
chr1 (214-275)||(6586989-6587050)
[»] chr2 (2 HSPs)
chr2 (93-201)||(10003247-10003354)
chr2 (214-274)||(35664412-35664472)


Alignment Details
Target: chr3 (Bit Score: 287; Significance: 1e-161; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 10 - 403
Target Start/End: Complemental strand, 33456511 - 33456128
Alignment:
Q  10 accaatatatgactgactctaagagattccttatatcattctcattacattgtctcttaataaagctacgacactttgttgcactttgttggaagtgtcg 109  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          |||||||||    
T  33456511 accaaaatatgactgactctaagagattccttatatcattctcattacattgtctcttaataaagctacgacactttgttg----------gaagtgtcg 33456422  T
Q  110 gctttatactcatatcaaatgcaagactttttggcaacaatcatactagattcaaagtcctcatatctatatttttcaaaatataatattatacctacgt 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||  |    
T  33456421 gctttatactcatatcaaatgcaagactttttggcaacaatcatactagattcaaagtcttcatatctatatatttcaaaatataatattatacctatat 33456322  T
Q  210 tctatacttattttttaggatgtaggacggtcgccctcttcactctgcgtcagatacggccctgaacttacacacacattcaattgttagatgaagtatg 309  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  | |||||||||||||||||||||||||||    
T  33456321 tctatacttattttttaggatgtaggacggtcgccctcttcactctgcgtcagatacggccctgaactt--atacacattcaattgttagatgaagtatg 33456224  T
Q  310 tcttacaaactatatctttgttctagcattgatattca--nnnnnnnnatatagtattgcaaatagtattaagtatgcaattttttccatttgttg 403  Q
    |||||||||||||||||||||| |||||||||||||||          ||||||||||||||||||||||||||||||||||||||||||||||||    
T  33456223 tcttacaaactatatctttgttttagcattgatattcattttttttttatatagtattgcaaatagtattaagtatgcaattttttccatttgttg 33456128  T

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Target: chr3; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 121 - 204
Target Start/End: Original strand, 44625463 - 44625546
Alignment:
Q  121 atatcaaatgcaagactttttggcaacaatcatactagattcaaagtcctcatatctatatttttcaaaatataatattatacc 204  Q
    |||||||||||||||||||||||||  ||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||    
T  44625463 atatcaaatgcaagactttttggcattaatcatactagattcaaagtcttcatttctatatttttcaaaatataatattatacc 44625546  T

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Target: chr3; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 91 - 205
Target Start/End: Original strand, 42908921 - 42909035
Alignment:
Q  91 cactttgttggaagtgtcggctttatactcatatcaaatgcaagactttttggcaacaatcatactagattcaaagtcctcatatctatatttttcaaaa 190  Q
    |||||||||||||||||| ||||| ||||||||| ||||||||  |||||||||||| |||||||| |||||||| || |||| |||||||||||||||     
T  42908921 cactttgttggaagtgtcagctttgtactcatattaaatgcaatgctttttggcaacgatcatactcgattcaaaatcttcatttctatatttttcaaag 42909020  T
Q  191 tataatattatacct 205  Q
    ||| |||||||||||    
T  42909021 tattatattatacct 42909035  T

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Target: chr3; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 114 - 184
Target Start/End: Complemental strand, 33381804 - 33381734
Alignment:
Q  114 tatactcatatcaaatgcaagactttttggcaacaatcatactagattcaaagtcctcatatctatatttt 184  Q
    ||||||||||||||||| ||||||||||| |||||||||||||||||||| |||| ||||  |||||||||    
T  33381804 tatactcatatcaaatgtaagactttttgacaacaatcatactagattcatagtcttcattgctatatttt 33381734  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 273
Target Start/End: Original strand, 9107211 - 9107272
Alignment:
Q  213 atacttattttttag-gatgtaggacggtcgccctcttcactctgcgtcagatacggccctg 273  Q
    ||||||||||||||| | | |||||||||||| |||||| | |||| |||||||||||||||    
T  9107211 atacttattttttagaggtctaggacggtcgcgctcttcgccctgcctcagatacggccctg 9107272  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 94 - 204
Target Start/End: Complemental strand, 51521314 - 51521199
Alignment:
Q  94 tttgttggaagtgtcggctttatactcatatcaaatgc-aagacttttt----ggcaacaatcatactagattcaaagtcctcatatctatatttttcaa 188  Q
    ||||||||||||||||||| ||||||| |||||||| | |||  |||||    | ||| |||||||||| |||||||||  |||| ||||||||||| ||    
T  51521314 tttgttggaagtgtcggctctatactcgtatcaaatactaaggttttttttttgtcaaaaatcatactaaattcaaagttttcatttctatattttttaa 51521215  T
Q  189 aatataatattatacc 204  Q
    | ||| ||||||||||    
T  51521214 agtatgatattatacc 51521199  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 209 - 273
Target Start/End: Original strand, 3412267 - 3412331
Alignment:
Q  209 ttctatacttattttttaggatgtaggacggtcgccctcttcactctgcgtcagatacggccctg 273  Q
    |||| |||||||||||| | |  ||||||||||||||||||| | |||| |||||||||||||||    
T  3412267 ttctgtacttattttttggaacctaggacggtcgccctcttcgccctgcctcagatacggccctg 3412331  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 114 - 173
Target Start/End: Complemental strand, 27922455 - 27922397
Alignment:
Q  114 tatactcatatcaaatgcaagactttttggcaacaatcatactagattcaaagtcctcat 173  Q
    |||||||||||||||| |||||| ||||||||| | | ||||||||||||||||| ||||    
T  27922455 tatactcatatcaaattcaagac-ttttggcaatatttatactagattcaaagtcttcat 27922397  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 91 - 158
Target Start/End: Original strand, 11872595 - 11872661
Alignment:
Q  91 cactttgttggaagtgtcggctttatactcatatcaaatgcaagactttttggcaacaatcatactag 158  Q
    |||||||| | ||||||||||| || |||||||||||||||||| | ||||||| || ||||||||||    
T  11872595 cactttgtcgaaagtgtcggctctacactcatatcaaatgcaaggc-ttttggctacgatcatactag 11872661  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 275
Target Start/End: Complemental strand, 6587050 - 6586989
Alignment:
Q  214 tacttattttttaggatgtaggacggtcgccctcttcactctgcgtcagatacggccctgaa 275  Q
    |||||||||||| || | ||||||| ||||||||||| | |||  |||||||||||||||||    
T  6587050 tacttatttttttgggtttaggacgatcgccctcttcgccctgtctcagatacggccctgaa 6586989  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 93 - 201
Target Start/End: Complemental strand, 10003354 - 10003247
Alignment:
Q  93 ctttgttggaagtgtcggctttatactcatatcaaatgcaagactttttggcaacaatcatactagattcaaagtcctcatatctatatttttcaaaata 192  Q
    |||||||| |||| || ||| ||||| || |||||||||||| ||||| | ||| | |||||||||||| |||| | |||| | ||||||||| ||| ||    
T  10003354 ctttgttgaaagtatcagctctatacacacatcaaatgcaaggctttt-gccaatattcatactagatttaaagccttcatttttatatttttaaaagta 10003256  T
Q  193 taatattat 201  Q
    ||| |||||    
T  10003255 taacattat 10003247  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 214 - 274
Target Start/End: Complemental strand, 35664472 - 35664412
Alignment:
Q  214 tacttattttttaggatgtaggacggtcgccctcttcactctgcgtcagatacggccctga 274  Q
    |||||||||||||||   |||| |||||||||||||| | |||| |||||||||| |||||    
T  35664472 tacttattttttagggcctagggcggtcgccctcttcgccctgcctcagatacggtcctga 35664412  T

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