View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13876_low_22 (Length: 414)
Name: NF13876_low_22
Description: NF13876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13876_low_22 |
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Alignment Details
Target: chr7 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 119 - 396
Target Start/End: Complemental strand, 1341907 - 1341630
Alignment:
| Q |
119 |
cttaaaattgtgtgttttatggttcatttcttgtggaaaatttggtttttgtggtttatttctctgattcaatgttgaaaactgtgtttttattttatat |
218 |
Q |
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| T |
1341907 |
cttaaaattgtgtgttttatggttcatttcttgtggaatatttggtttttatggtttatttctctgattcaatgttgaaaactgtgtttttattttatat |
1341808 |
T |
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| Q |
219 |
atgatttcatgttgaagaatgtgttttagggttcatttctttatgttatgttaaaacattttaattattgatttcaattcatttgagttttgatcttact |
318 |
Q |
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| T |
1341807 |
atgatttcatgttgaagaatgtgttttagggttcatttctttatgttatgttaaaacattttatttattgatttcaattcatttgagttttgatcttact |
1341708 |
T |
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| Q |
319 |
gtgttgatgtaatgaatgttgtttagggggaggaaggaaaggaagattacattgctaggattgtggagatgtttgaaa |
396 |
Q |
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| T |
1341707 |
gtgttgatgtgatgaatgttgtttagggggaggaaggaaaggaggattacattgctaggattgtggagatgtttgaaa |
1341630 |
T |
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Target: chr6 (Bit Score: 90; Significance: 2e-43; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 144 - 300
Target Start/End: Complemental strand, 31943767 - 31943610
Alignment:
| Q |
144 |
atttcttgtggaaaatttggt-ttttgtggtttatttctctgattcaatgttgaaaactgtgtttttattttatatatgatttcatgttgaagaatgtgt |
242 |
Q |
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| T |
31943767 |
atttcttgtggaaaatttggtgttttagggtttatttctgtaatttaaaattgaaaactatgtttttgttttatatacgatttcatgttgaaaaatgtgt |
31943668 |
T |
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| Q |
243 |
tttagggttcatttctttatgttatgttaaaacattttaattattgatttcaattcat |
300 |
Q |
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| T |
31943667 |
tttagggttcatttctttatgtcatgttaaaatatttttattattgattttaattcat |
31943610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 300 - 396
Target Start/End: Complemental strand, 31943538 - 31943442
Alignment:
| Q |
300 |
tttgagttttgatcttactgtgttgatgtaatgaatgttgtttagggggaggaaggaaaggaagattacattgctaggattgtggagatgtttgaaa |
396 |
Q |
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| T |
31943538 |
tttgagttttgatcttactgtgttgatttgatgaatgttgtttagggggaggaaggaaaagaggattacattgctaggattgtggagttgtttgaaa |
31943442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 122 - 150
Target Start/End: Complemental strand, 31943798 - 31943770
Alignment:
| Q |
122 |
aaaattgtgtgttttatggttcatttctt |
150 |
Q |
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| T |
31943798 |
aaaattgtgtgttttatggttcatttctt |
31943770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 337 - 396
Target Start/End: Complemental strand, 9393868 - 9393809
Alignment:
| Q |
337 |
ttgtttagggggaggaaggaaaggaagattacattgctaggattgtggagatgtttgaaa |
396 |
Q |
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| T |
9393868 |
ttgtttagggggaggaaggaaaagaggattacatcgctacgattgtggagatgtttgaaa |
9393809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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