View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13876_low_27 (Length: 373)
Name: NF13876_low_27
Description: NF13876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13876_low_27 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 129 - 373
Target Start/End: Complemental strand, 41594673 - 41594429
Alignment:
| Q |
129 |
tatgattatactgatccaagtaggtaagggatttaggtttgatgcctcacatggnnnnnnnttggttggaacctgtttttcgacagagagtggaaacttg |
228 |
Q |
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| T |
41594673 |
tatgtttatactgatccaagtgggtaagggatttaggtttgatgcctcacatggaaaaaaattgtttggaacctgtttttcgacagagagtggaaacttg |
41594574 |
T |
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| Q |
229 |
gtacctatggtaacatgctaaaaacaatattaagatcatcaatcacaccttttctctgaattttctgtggccagcctttgtatttctcattttcgttttg |
328 |
Q |
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| T |
41594573 |
gtacctatggtaacatgctaaaaacaatattatgatcatcaatcacaccttttctctgaattttctgtggccagcctttgtatttctcattttcgttttg |
41594474 |
T |
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| Q |
329 |
atttgatgaattctttttaagttcttatataaatatgaagttttt |
373 |
Q |
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| T |
41594473 |
atttgatgaattatttttaagttcttatataaatatgaagttttt |
41594429 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 19 - 105
Target Start/End: Complemental strand, 41594788 - 41594702
Alignment:
| Q |
19 |
ccaaattccttacaagaaatccaaaaaatatatattttgatcaaaagaaaaatcattatgattgattattatcatttgattcatgat |
105 |
Q |
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| T |
41594788 |
ccaaattccttacaagaaatccaaaaaatatatattttgatcaaaagaaaaatcattatgattgattattatcatttgattcatgat |
41594702 |
T |
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