View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13876_low_28 (Length: 359)

Name: NF13876_low_28
Description: NF13876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13876_low_28
NF13876_low_28
[»] chr2 (8 HSPs)
chr2 (92-353)||(33021023-33021284)
chr2 (92-346)||(33038929-33039183)
chr2 (1-94)||(33019673-33019766)
chr2 (235-348)||(33027433-33027546)
chr2 (1-94)||(33026070-33026163)
chr2 (1-94)||(33037567-33037660)
chr2 (98-188)||(33027356-33027445)
chr2 (31-88)||(33023684-33023741)


Alignment Details
Target: chr2 (Bit Score: 254; Significance: 1e-141; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 92 - 353
Target Start/End: Original strand, 33021023 - 33021284
Alignment:
Q  92 ttcatcgtggttacgacatgtggaataatgtgatgacaaggtaaattgtggatctcggaaacctctcttaattgatgattattaagagcctcttgttgtt 191  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33021023 ttcatcgtggttacgacatgtggaataatgtgatgacaaggtaaattgtggatctcggaaacctctcttaattgatgattattaagagcctcttgttgtt 33021122  T
Q  192 atatgattgccttctgtttctacataatttcatgtattatgtcagagtctcttgttgtcattcaaagaatacacaaataaagaaagaaaatttatctata 291  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33021123 atatgattgccttctgtttctacataatttcatgtattatgtcagagcctcttgttgtcattcaaagaatacacaaataaagaaagaaaatttatctata 33021222  T
Q  292 agagcctcttgatttgattgtgtttttactatcaagtaacgtaagattttatatattcttcg 353  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  33021223 agagcctcttgatttgattgtgtttttactatcaagtaacgtaagattttatatattgttcg 33021284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 92 - 346
Target Start/End: Original strand, 33038929 - 33039183
Alignment:
Q  92 ttcatcgtggttacgacatgtggaataatgtgatga-caaggtaaattgtggatctcggaaacctctcttaattgatgattattaagagcctcttgttgt 190  Q
    ||||||||||||||||||||||||||| |||||  | |||||||| || ||| ||| ||||||||| |||||||||||||||||||||||||||||||||    
T  33038929 ttcatcgtggttacgacatgtggaata-tgtgaccaacaaggtaagttatggttcttggaaacctcgcttaattgatgattattaagagcctcttgttgt 33039027  T
Q  191 tatatgattgccttctgtttctacataatttcatgtattatgtcagagtctcttgttgtcattcaaagaatacacaaataaagaaagaaaatttatctat 290  Q
     |||||||| |||||||||| ||||||||| |||||||||||| |||| ||||||||||||||||||||| |||||| ||||||||||||||||||||||    
T  33039028 catatgatttccttctgtttgtacataattgcatgtattatgttagagcctcttgttgtcattcaaagaaaacacaagtaaagaaagaaaatttatctat 33039127  T
Q  291 aagagcctcttgatttgattgtgtttttactatcaagtaacgtaagattttatata 346  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||    
T  33039128 aagagcctcttgatttgattgtgtttttactatcaagtaacctaagattttgtata 33039183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 33019673 - 33019766
Alignment:
Q  1 tctttgattccccaatgctctctgattttccaacgtttactgtcaaacaaacacaagtcagttaccctgattgtctcaaaattgaatatgattc 94  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33019673 tctttgattccccaatgccctctgattttccaacgtttactgtcaaacaaacacaagtcagttaccctgattgtctcaaaattgaatatgattc 33019766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 235 - 348
Target Start/End: Original strand, 33027433 - 33027546
Alignment:
Q  235 agagtctcttgttgtcattcaaagaatacacaaataaagaaagaaaatttatctataagagcctcttgatttgattgtgtttttactatcaagtaacgta 334  Q
    |||| |||||||| |||||||||||||||||||  ||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||    
T  33027433 agagcctcttgttatcattcaaagaatacacaagcaaataaagaaaatttatctataagagcctcttgatttgattgtgcttttactatcaagtaaccta 33027532  T
Q  335 agattttatatatt 348  Q
    ||||| | ||||||    
T  33027533 agattctgtatatt 33027546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 33026070 - 33026163
Alignment:
Q  1 tctttgattccccaatgctctctgattttccaacgtttactgtcaaacaaacacaagtcagttaccctgattgtctcaaaattgaatatgattc 94  Q
    ||||||||||||| |||| |||||||||||||||||||||| |||| ||||||||| |||||||||||||||||||||||||||||||||||||    
T  33026070 tctttgattccccgatgccctctgattttccaacgtttactatcaaccaaacacaactcagttaccctgattgtctcaaaattgaatatgattc 33026163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 33037567 - 33037660
Alignment:
Q  1 tctttgattccccaatgctctctgattttccaacgtttactgtcaaacaaacacaagtcagttaccctgattgtctcaaaattgaatatgattc 94  Q
    |||||||||||||||||| |||||||||||||||||||||||| || || |||||| |||||||||||||||||||||||||||||||||||||    
T  33037567 tctttgattccccaatgccctctgattttccaacgtttactgtaaaccagacacaactcagttaccctgattgtctcaaaattgaatatgattc 33037660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 98 - 188
Target Start/End: Original strand, 33027356 - 33027445
Alignment:
Q  98 gtggttacgacatgtggaataatgtgatgacaaggtaaattgtggatctcggaaacctctcttaattgatgattattaagagcctcttgtt 188  Q
    ||||||||| ||||  ||||| |||||| |||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||    
T  33027356 gtggttacggcatgaagaata-tgtgataacaaggtaaattatggatctcggaaacctctcttaattaatgattattaagagcctcttgtt 33027445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 31 - 88
Target Start/End: Original strand, 33023684 - 33023741
Alignment:
Q  31 caacgtttactgtcaaacaaacacaagtcagttaccctgattgtctcaaaattgaata 88  Q
    ||||||||||| |||  ||||||||  ||||||||||| |||||||||||||||||||    
T  33023684 caacgtttactatcacgcaaacacagctcagttaccctaattgtctcaaaattgaata 33023741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University