View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13876_low_30 (Length: 344)
Name: NF13876_low_30
Description: NF13876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13876_low_30 |
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| [»] scaffold0257 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 64; Significance: 6e-28; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 234 - 305
Target Start/End: Original strand, 25191184 - 25191255
Alignment:
| Q |
234 |
gttatggaatgtgtaaaagtgatattctctcatttctcatagatgaatcaacatgtacaaggagtatatata |
305 |
Q |
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| T |
25191184 |
gttatggaatgtgtaaaagtgatattctctcatttctcatagatgattcaacatgtacaagtagtatatata |
25191255 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 234 - 305
Target Start/End: Original strand, 17070822 - 17070893
Alignment:
| Q |
234 |
gttatggaatgtgtaaaagtgatattctctcatttctcatagatgaatcaacatgtacaaggagtatatata |
305 |
Q |
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| T |
17070822 |
gttaaggaatgtgtaaaaatgaatatctctcatttctcatggatgaatcaacaagtacatggagtatatata |
17070893 |
T |
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Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 261 - 313
Target Start/End: Complemental strand, 28332981 - 28332929
Alignment:
| Q |
261 |
tctcatttctcatagatgaatcaacatgtacaaggagtatatatagtattaca |
313 |
Q |
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| T |
28332981 |
tctcatttctcatagttgaatcaacatgtacaagaagtatatatagtgttaca |
28332929 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0257 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: scaffold0257
Description:
Target: scaffold0257; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 162 - 225
Target Start/End: Complemental strand, 7322 - 7264
Alignment:
| Q |
162 |
ttgtaactaacttttgtaacaaactttcttcatgaaaatgaatgagagagaaaggctctagata |
225 |
Q |
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| T |
7322 |
ttgtaactaacttt-gtaacaaactttcttcatgaa----gatgagagagaaaggctctagata |
7264 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0257; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 162 - 225
Target Start/End: Complemental strand, 11836 - 11778
Alignment:
| Q |
162 |
ttgtaactaacttttgtaacaaactttcttcatgaaaatgaatgagagagaaaggctctagata |
225 |
Q |
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| T |
11836 |
ttgtaactaacttt-gtaacaaactttcttcatgaa----gatgagagagaaaggctctagata |
11778 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 162 - 225
Target Start/End: Complemental strand, 19651495 - 19651437
Alignment:
| Q |
162 |
ttgtaactaacttttgtaacaaactttcttcatgaaaatgaatgagagagaaaggctctagata |
225 |
Q |
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| T |
19651495 |
ttgtaactaacttt-gtaacaaactttcttcatgaa----gatgagagagaaaggctctagata |
19651437 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 162 - 225
Target Start/End: Complemental strand, 19665258 - 19665200
Alignment:
| Q |
162 |
ttgtaactaacttttgtaacaaactttcttcatgaaaatgaatgagagagaaaggctctagata |
225 |
Q |
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| T |
19665258 |
ttgtaactaacttt-gtaacaaactttcttcatgaa----gatgagagagaaaggctctagata |
19665200 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 162 - 212
Target Start/End: Complemental strand, 28558051 - 28558001
Alignment:
| Q |
162 |
ttgtaactaacttttgtaacaaactttcttcatgaaaatgaatgagagaga |
212 |
Q |
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| T |
28558051 |
ttgtaactaacttttgtaacaaactttcttcttgaagatgagagagagaga |
28558001 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 26 - 95
Target Start/End: Complemental strand, 28558191 - 28558122
Alignment:
| Q |
26 |
agacgagaaaatgcaacacagtgcaaacaaatcaatggagattcgaggataaaccacgaaagctacaaaa |
95 |
Q |
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| T |
28558191 |
agacgagaaaatgcaactcagtgcaagaaaaacaacgaagattcgaggataaaccatgaaatctgcaaaa |
28558122 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 305
Target Start/End: Complemental strand, 28562622 - 28562550
Alignment:
| Q |
234 |
gttatggaatgtgtaaaagtg-atattctctcatttctcatagatgaatcaacatgtacaaggagtatatata |
305 |
Q |
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||||||||||| |||||| || ||| |||||||||| ||||||||||| |||| ||||| ||||||| |||| |
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| T |
28562622 |
gttatggaatgcgtaaaaatggataagctctcatttcacatagatgaattaacaagtacatggagtatttata |
28562550 |
T |
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