View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13876_low_35 (Length: 290)

Name: NF13876_low_35
Description: NF13876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13876_low_35
NF13876_low_35
[»] chr1 (2 HSPs)
chr1 (16-104)||(29060733-29060821)
chr1 (206-275)||(29060819-29060888)
[»] chr3 (1 HSPs)
chr3 (26-99)||(28835813-28835885)


Alignment Details
Target: chr1 (Bit Score: 85; Significance: 1e-40; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 16 - 104
Target Start/End: Original strand, 29060733 - 29060821
Alignment:
Q  16 atggagggggatttgaattcattttgattttcaaaataaaatcctcggtaactttaattaccattagatcaaacaaccatcacattaga 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  29060733 atggagggggatttgaattcattttgattttcaaaataaaatcctcggtaactttaattaccattagatcaaacaaccatcccattaga 29060821  T

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Target: chr1; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 206 - 275
Target Start/End: Original strand, 29060819 - 29060888
Alignment:
Q  206 agagggggttaggtagctcatctgatttgagtgttaaagagtagcatatcatgatattaatagtaacaac 275  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29060819 agagggggtcaggtagctcatctgatttgagtgttaaagagtagcatatcatgatattaatagtaacaac 29060888  T

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Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 26 - 99
Target Start/End: Original strand, 28835813 - 28835885
Alignment:
Q  26 atttgaattcattttgattttcaaaataaaatcctcggtaactttaattaccattagatcaaacaaccatcaca 99  Q
    |||| |||| ||||||| ||||||||||||| ||||||| |||||||||||||||||||||||||| |||||||    
T  28835813 atttcaatttattttgaatttcaaaataaaa-cctcggtgactttaattaccattagatcaaacaatcatcaca 28835885  T

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