View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13876_low_37 (Length: 272)
Name: NF13876_low_37
Description: NF13876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13876_low_37 |
 | |
|
| [»] chr5 (5 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 250; Significance: 1e-139; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 4 - 272
Target Start/End: Complemental strand, 6145963 - 6145694
Alignment:
| Q |
4 |
caatagtaagtccgaatccaagaggagacgaaggagggtttagccggtaattattactcggtgaagcgtctgaagtcattattgtttgttgcggtggtac |
103 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6145963 |
caatagtaagtccggatccaagaggagacgaaggagggtttagccggtaattattactcggtgaagcgtctgaagtcattattgtttgttgcggtggtac |
6145864 |
T |
|
| Q |
104 |
ataaccactgggccacacaggaacaattgttggagaaggaatttgattcacaccaccttctaggaataacctaacatgtggagggctattaatttcgg-c |
202 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
6145863 |
ataactactgggccacacaggaacaattgttggagaaggaatttgattcacacgaccttctaggaataacctaacatgtggagggctattaatttcggac |
6145764 |
T |
|
| Q |
203 |
cgatttgtagcactacttggtcctgcatttatatcatcatcttcattcatcaggaaatgatcccaaaatg |
272 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6145763 |
cgatttgtagcactacttggtcctgcatttatatcatcatcttcattcatcaggaaatgatcccaaaatg |
6145694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 272
Target Start/End: Complemental strand, 6126550 - 6126278
Alignment:
| Q |
1 |
cagcaatagtaagtccgaatccaagaggagacgaaggagggtttagccggtaattattactcggtgaagcgtctgaagtcattattgtttgttgcggtgg |
100 |
Q |
| |
|
|||||||||||| |||| ||||||||||| ||| ||||||||||||||||| || ||||||| | |||||||||||||| |||||| |||||| ||||| |
|
|
| T |
6126550 |
cagcaatagtaaatccggatccaagaggaaacggaggagggtttagccggttataattactcagcgaagcgtctgaagttgttattggttgttgtggtgg |
6126451 |
T |
|
| Q |
101 |
tacataaccactgggccacacaggaacaattgttggagaaggaatttgattcacaccaccttctaggaataacctaacatgtggagggctattaatttcg |
200 |
Q |
| |
|
|| | ||| ||||||||||||| || ||||| |||| |||| |||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
6126450 |
tatagaactactgggccacacatgagcaatttttggtgaagcaatttgattcacacgaccttctgagaataacctaacatgtggagggctattaatttcg |
6126351 |
T |
|
| Q |
201 |
-gccgatttgtagcactacttggtcctgcatttatatcatcatcttcattcatcaggaaatgatcccaaaatg |
272 |
Q |
| |
|
| || | |||||||||||||||||||||| ||||||| ||||||||| ||||| ||| | ||||||||||| |
|
|
| T |
6126350 |
aactgagtagtagcactacttggtcctgcatctatatcagcatcttcatacatcaagaacttatcccaaaatg |
6126278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 6152152 - 6152049
Alignment:
| Q |
1 |
cagcaatagtaagtccgaatccaagaggagacgaaggagggtttagccggtaattattactcggtgaagcgtctgaagtcattattgtttgttgcggtgg |
100 |
Q |
| |
|
|||||||||||| ||||||||||||||||| | ||||||||||||| |||||| |||||||||||||| || | ||||| |||||| ||| | ||||| |
|
|
| T |
6152152 |
cagcaatagtaaatccgaatccaagaggagctggaggagggtttagctggtaataattactcggtgaagggtttaaagtcgttattggttgccgtggtgg |
6152053 |
T |
|
| Q |
101 |
taca |
104 |
Q |
| |
|
|||| |
|
|
| T |
6152052 |
taca |
6152049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 4 - 182
Target Start/End: Complemental strand, 34283744 - 34283569
Alignment:
| Q |
4 |
caatagtaagtccgaatccaagaggagacgaaggagggtttagccggtaattattactcggtgaagcgtctgaagtcattattgtttgttgcggtggtac |
103 |
Q |
| |
|
||||||||| ||| ||||| || |||| | || |||||||||| |||| |||||||| || || ||||||||| |||||| |||| | |||||||| |
|
|
| T |
34283744 |
caatagtaaatcccgatccaggaagagatggagaagggtttagc---taataattactcgatggaggatctgaagtcgttattggttgtcgtggtggtac |
34283648 |
T |
|
| Q |
104 |
ataaccactgggccacacaggaacaattgttggagaaggaatttgattcacaccaccttctaggaataacctaacatgt |
182 |
Q |
| |
|
| ||| | | ||||||||| ||| ||| ||||||||||||||| |||||||| ||||||| ||||||||||||||| |
|
|
| T |
34283647 |
aaaactaataggccacacatgaaaaatagttggagaaggaattcgattcacaagaccttctgtcaataacctaacatgt |
34283569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 66 - 181
Target Start/End: Original strand, 34282889 - 34283003
Alignment:
| Q |
66 |
gaagcgtctgaagtcattattgtttgttgcggtggtacataaccactgggccacacaggaacaattgttggagaaggaatttgattcacaccaccttcta |
165 |
Q |
| |
|
|||| |||||||||| |||||| |||| | |||| |||| ||| || ||||||||| | ||||| | |||||||||||||||||||||| ||||||| |
|
|
| T |
34282889 |
gaagggtctgaagtcgttattggttgtcgtggtg-tacaaaactaccaggccacacatgcacaatagatggagaaggaatttgattcacatgaccttctg |
34282987 |
T |
|
| Q |
166 |
ggaataacctaacatg |
181 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
34282988 |
tcaataacctaacatg |
34283003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University