View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13876_low_47 (Length: 222)
Name: NF13876_low_47
Description: NF13876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13876_low_47 |
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Alignment Details
Target: chr6 (Bit Score: 168; Significance: 3e-90; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 20 - 207
Target Start/End: Original strand, 16401738 - 16401925
Alignment:
| Q |
20 |
tgttttgcaattttcaatatgaattcagtcaaaacaacacaagaagtgtcgttcgtgaaaagagcacttgataaagccgaaattaaacagattctacaaa |
119 |
Q |
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| T |
16401738 |
tgttttgcaattttcaatatgaattcagtcaaaacaacacaagaagtgtcgttcgtgaaaagagcacttgataaagctgaaatcaagcagattctacaaa |
16401837 |
T |
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| Q |
120 |
gtaaatcctttgctcctttacttttccaagaaagtaactttcctatgtatttgaacatatctgctctttcaagataaacactaacaac |
207 |
Q |
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| T |
16401838 |
gtaaatcctttgctcctttacttttccaagaaagtaattttcctatgtatttgaacatgtctgctctttcaagataaacactaacaac |
16401925 |
T |
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Target: chr8 (Bit Score: 136; Significance: 4e-71; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 8 - 207
Target Start/End: Complemental strand, 14305219 - 14305020
Alignment:
| Q |
8 |
ggtagattatactgttttgcaattttcaatatgaattcagtcaaaacaacacaagaagtgtcgttcgtgaaaagagcacttgataaagccgaaattaaac |
107 |
Q |
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| T |
14305219 |
ggtaaattatgctgttttgcaattttcaatacgaattcggtcaaaacaacacaagaagtgtcatttgtgaaaaatgcacttgataaagctgaaatcaaac |
14305120 |
T |
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| Q |
108 |
agattctacaaagtaaatcctttgctcctttacttttccaagaaagtaactttcctatgtatttgaacatatctgctctttcaagataaacactaacaac |
207 |
Q |
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| T |
14305119 |
aaattctacaaagtaaatcctttggccctttacttttccaagaaagtaactttcctatgtatttaaacatgtctgctctttcaagatatacactaacaac |
14305020 |
T |
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