View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13876_low_48 (Length: 218)
Name: NF13876_low_48
Description: NF13876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13876_low_48 |
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Alignment Details
Target: chr3 (Bit Score: 171; Significance: 5e-92; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 21 - 207
Target Start/End: Complemental strand, 20047456 - 20047270
Alignment:
| Q |
21 |
atcaaaactagtcttaaaatttatccttcatttgttatcaacaaaatagagagtatgtaaagagaatcactgtcataagtttgatgaacaaaattcaaaa |
120 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
20047456 |
atcaaaactaatcttaaaatttatccttcatttgttatcaacaaaatagagagtatgaaaagagaatcactgtcataagtttgatgaacaaaattcaaaa |
20047357 |
T |
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| Q |
121 |
acaagataactttttaagatgaagatggtggctgttgatttcttagagcactgaggcgttgcctcaactcttcacccctttgcttct |
207 |
Q |
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| T |
20047356 |
acaagataactttttaagatgaagatggtggctgttgatttcttagagcactgaggcgttgcctcaactcttccccccttttcttct |
20047270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 45 - 160
Target Start/End: Original strand, 20014684 - 20014798
Alignment:
| Q |
45 |
ccttcatttgttatcaacaaaatagagagtatgtaaagagaatcactgtcataagtttgatgaacaaaattcaaaaacaagataactttttaagatgaag |
144 |
Q |
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||||||||| ||||||||||||| ||||||||| ||| || |||| || | ||||| | ||||| ||||||||||||| | || |||||||| |||| |
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| T |
20014684 |
ccttcatttcttatcaacaaaatggagagtatgaaaaaagtgtcaccgtaacgagtttcaggaacagaattcaaaaacaaca-aaaattttaagaagaag |
20014782 |
T |
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| Q |
145 |
atggtggctgttgatt |
160 |
Q |
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| T |
20014783 |
atggtggtggttgatt |
20014798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 65; Significance: 1e-28; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 21 - 199
Target Start/End: Original strand, 12578740 - 12578915
Alignment:
| Q |
21 |
atcaaaactagtcttaaaatttatccttcatttgttatcaacaaaatagagagtatgtaaagagaatcactgtcataagtttgatgaacaaaattcaaaa |
120 |
Q |
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||||||| |||||||| |||||||||||||||| ||||||||||| ||||||||||| ||||||||||| |||||||||| | |||| | ||||||||| |
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| T |
12578740 |
atcaaaaatagtcttacaatttatccttcatttattatcaacaaagtagagagtatggaaagagaatcattgtcataagtaggctgaagagaattcaaaa |
12578839 |
T |
|
| Q |
121 |
acaagataactttttaagatgaagatggtggctgttgatttcttagagcactgaggcgttgcctcaactcttcacccct |
199 |
Q |
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||||||| | || |||| ||||||||| | ||||| || ||| || || |||||||| |||| ||||| ||| |||| |
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| T |
12578840 |
acaagatcatttattaa---gaagatggtcgttgttggttcctttgaacaatgaggcgtagcctaaactcgtcatccct |
12578915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 21 - 199
Target Start/End: Original strand, 12494641 - 12494817
Alignment:
| Q |
21 |
atcaaaactagtcttaaaatttatccttcatttgttatcaacaaaatagagagtatgtaaagagaatcactgtcataagtttgatgaacaaaattcaaaa |
120 |
Q |
| |
|
||||||| |||||||| |||||||| ||||||||||||||||||||||||||| ||||||||||| |||||||||| |||||| | ||||||||| |
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| T |
12494641 |
atcaaaaatagtcttacaatttatc-----tttgttatcaacaaaatagagagtatggaaagagaatcattgtcataagtaggatgaagagaattcaaaa |
12494735 |
T |
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| Q |
121 |
acaagataacttttt---aagatgaagatggtggctgttgatttcttagagcactgaggcgttgcctcaactcttcacccct |
199 |
Q |
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||||||| | || || |||||||||||||| | |||||||| ||| || || |||||||| |||| ||||| ||| |||| |
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| T |
12494736 |
acaagatcatttattaagaagatgaagatggtcgttgttgattcctttgaacaatgaggcgtagcctaaactcgtcatccct |
12494817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 21 - 184
Target Start/End: Original strand, 12518450 - 12518609
Alignment:
| Q |
21 |
atcaaaactagtcttaaaatttatccttcatttgttatcaacaaaatagagagtatgtaaagagaatcactgtcataagtttgatgaacaaaattcaaaa |
120 |
Q |
| |
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||||||| |||||||| |||||||| ||||||||||||||||||||| |||| ||| |||||| |||||||||| |||||| | ||||||||| |
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| T |
12518450 |
atcaaaaatagtcttacaatttatc-----tttgttatcaacaaaatagag--tatggaaaccgaatcattgtcataagtaggatgaagagaattcaaaa |
12518542 |
T |
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| Q |
121 |
acaagataacttttt---aagatgaagatggtggctgttgatttcttagagcactgaggcgttgcct |
184 |
Q |
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||||||| | || || |||||||||||||| | |||||||| ||| || || |||||||| |||| |
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| T |
12518543 |
acaagatcatttattaagaagatgaagatggtcgttgttgattcctttgaacaatgaggcgtagcct |
12518609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 44 - 199
Target Start/End: Original strand, 26353408 - 26353569
Alignment:
| Q |
44 |
tccttcatttgttatcaacaaaatagagagtatgtaaagagaatcactgtcataagtttgatgaacaaaattcaaaaacaagataactttttaagatgaa |
143 |
Q |
| |
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||||||| ||||| |||||| ||| |||||||| |||||| ||||||||| | ||||| ||||| ||||||||||||| |||| |||||||| ||| |
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| T |
26353408 |
tccttcaattgttttcaacacaatcaagagtatgaaaagagcatcactgtcgtgagtttcatgaagggaattcaaaaacaaaataaagttttaagaagaa |
26353507 |
T |
|
| Q |
144 |
---gatggtggctgttgatttcttagagcac---tgaggcgttgcctcaactcttcacccct |
199 |
Q |
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|||||||| |||||||| | ||| ||| ||||| ||||||||||||||||| |||| |
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| T |
26353508 |
gatgatggtggttgttgattcttcagaacactagtgaggagttgcctcaactcttcatccct |
26353569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 124
Target Start/End: Complemental strand, 1718766 - 1718687
Alignment:
| Q |
44 |
tccttcatttgttatcaacaaaatagagagtatgtaaagagaatcactgtcataagtttgatgaacaaaattcaaaaacaa |
124 |
Q |
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|||||||||||||||||||||||| ||||||| |||||| |||| |||||| ||||| || || |||| |||||||||| |
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| T |
1718766 |
tccttcatttgttatcaacaaaatgaagagtat-aaaagagcatcaatgtcatgagtttcataaagaaaagtcaaaaacaa |
1718687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 38 - 96
Target Start/End: Original strand, 25999583 - 25999642
Alignment:
| Q |
38 |
aatttatccttcatttgttatcaacaaaatagagagtatgtaaa-gagaatcactgtcat |
96 |
Q |
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||||| |||||||||||||||||||||||||| || |||| ||| ||| ||||||||||| |
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| T |
25999583 |
aatttctccttcatttgttatcaacaaaatagggaatatgaaaacgagcatcactgtcat |
25999642 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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