View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13876_low_50 (Length: 209)
Name: NF13876_low_50
Description: NF13876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13876_low_50 |
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Alignment Details
Target: chr2 (Bit Score: 130; Significance: 1e-67; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 130; E-Value: 1e-67
Query Start/End: Original strand, 17 - 146
Target Start/End: Complemental strand, 4970445 - 4970316
Alignment:
| Q |
17 |
aggaattaattaattaccgcgtggaaaggtaaaaagggtgcaagaatgaagaatgtataaggaaggaacttaattcaatatggtggtgtaatggggtgga |
116 |
Q |
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| T |
4970445 |
aggaattaattaattaccgcgtggaaaggtaaaaagggtgcaagaatgaagaatgtataaggaaggaacttaattcaatatggtggtgtaatggggtgga |
4970346 |
T |
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| Q |
117 |
tgcaaggtggtgacaacttggaacaaggac |
146 |
Q |
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| T |
4970345 |
tgcaaggtggtgacaacttggaacaaggac |
4970316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 17 - 144
Target Start/End: Complemental strand, 4988354 - 4988227
Alignment:
| Q |
17 |
aggaattaattaattaccgcgtggaaaggtaaaaagggtgcaagaatgaagaatgtataaggaaggaacttaattcaatatggtggtgtaatggggtgga |
116 |
Q |
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| T |
4988354 |
aggaattaattaattaccgcgtggaaaggtaaaaagggtgcaagaatgaagaatgtataaggaaggaacttaattcaatatggtggtgtaatggggtgga |
4988255 |
T |
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| Q |
117 |
tgcaaggtggtgacaacttggaacaagg |
144 |
Q |
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| T |
4988254 |
tgcaaggtggtgacaacttggaacaagg |
4988227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 17 - 79
Target Start/End: Complemental strand, 28571317 - 28571255
Alignment:
| Q |
17 |
aggaattaattaattaccgcgtggaaaggtaaaaagggtgcaagaatgaagaatgtataagga |
79 |
Q |
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| T |
28571317 |
aggaatttattaattacggcgtagaaagggaaaaagggtgcaaaaatgaagaatgtgtaagga |
28571255 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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