View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13876_low_7 (Length: 647)
Name: NF13876_low_7
Description: NF13876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13876_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 387; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 17 - 448
Target Start/End: Original strand, 43921498 - 43921937
Alignment:
| Q |
17 |
aaaagttagggacagactccaagagaaagtatgctttccctaatattctgtttggaaattgaaaccataaattgccgagacgcttcttcaaaataataaa |
116 |
Q |
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| T |
43921498 |
aaaagttagggacagactccaagagaaagtatgctttccctaatattctgtttggaaattgaaaccataaattgccgagacgcttcttcaaaataataaa |
43921597 |
T |
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| Q |
117 |
ttgtcgagaccaaaaattgaaatgtttggaaagtcaaaattaaaattttctataatgatcccaaaccacagtttaagggaaacttcaagaatcggaga-- |
214 |
Q |
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| T |
43921598 |
ttgtcgagaccaaaaattgaaatgtttggaaagtcaaaattaaaattttctttaatgatcccaaaccacagtttaagggaaacttcaagaatcggagaaa |
43921697 |
T |
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| Q |
215 |
------aaccgagaaacaatatgagattgccatggtgttgatggtcaatcaccaaacacctgaggtgttaactcagtggtaagaacttcgccgtataagc |
308 |
Q |
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| T |
43921698 |
ccgagaaaccgagaaacaatatgagattgccatggtgttgatggtcaatcaccagacacctgaggtgttaactcagtggtaagaacttagccgtataagc |
43921797 |
T |
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| Q |
309 |
tcagctagttagttcaaacttcaaatccctcggagacggtattagtgtaaatttgattaataaaaatctccctcttccccaattaaacaaaaagtgcagc |
408 |
Q |
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| T |
43921798 |
tcagatacttagttcaaacttcaaatccctcggagacggtattagtgtcaatttgattaataaaaatctccctcttccccaattaaacaaaaagtgcagc |
43921897 |
T |
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| Q |
409 |
actgagataaatcgataatcatgtacaagaatttcgtatt |
448 |
Q |
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| T |
43921898 |
actgagataaatcgataatcatgtacaagaatttcgtatt |
43921937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 493 - 626
Target Start/End: Original strand, 43921985 - 43922118
Alignment:
| Q |
493 |
tagaatcgataagatactagtggtgcaattacggattctagtgcgatcgatgataataagagaggtgaaatgaataaaaaaggagatagaaattgaaacc |
592 |
Q |
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| T |
43921985 |
tagaatcgataagatactagtggtgcaattacggattctagtgcgatcgatgataataagagaggtgaaatgaataaaaaaggagatagaaattgaaacc |
43922084 |
T |
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| Q |
593 |
ttgattttcatcggtggcggtgggagatggaaga |
626 |
Q |
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| T |
43922085 |
ttgattttcatcggtggcggtgggagatggaaga |
43922118 |
T |
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