View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13877_high_1_N (Length: 996)
Name: NF13877_high_1_N
Description: NF13877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13877_high_1_N |
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Alignment Details
Target: chr8 (Bit Score: 35; Significance: 0.0000000004; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 490 - 647
Target Start/End: Original strand, 12933827 - 12933984
Alignment:
| Q |
490 |
atttcttcatggagatttggaagaggagatttatatggagcaaccagaaggatttgaagtag-ctggaaagaaacacatggtgtgcaaattgaataagag |
588 |
Q |
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| T |
12933827 |
atttcttcatggagatttagatgaagagatctacatggttcaaccagaaggatttg-agaagactcgaaaggagcacttggtttgcaaattgaagaagag |
12933925 |
T |
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| Q |
589 |
tctttatggattgaagcaggcaccaaggcagtggtacatgaagtttgattcattcatga |
647 |
Q |
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| T |
12933926 |
cttgtatggattaaaacaagcaccaagacaatggtataagaaatttgactcgttcatga |
12933984 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 497 - 534
Target Start/End: Original strand, 36999937 - 36999974
Alignment:
| Q |
497 |
catggagatttggaagaggagatttatatggagcaacc |
534 |
Q |
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| T |
36999937 |
catggtgacttggaagaggagatttatatggagcaacc |
36999974 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 490 - 647
Target Start/End: Complemental strand, 28608778 - 28608621
Alignment:
| Q |
490 |
atttcttcatggagatttggaagaggagatttatatggagcaaccagaaggatttgaagtag-ctggaaagaaacacatggtgtgcaaattgaataagag |
588 |
Q |
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| T |
28608778 |
atttcttcatggagatttagatgaagagatctacatggttcaaccagaaggattt-aagaagactcgaaaggagcacttggtttgcaaattgaagaagag |
28608680 |
T |
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| Q |
589 |
tctttatggattgaagcaggcaccaaggcagtggtacatgaagtttgattcattcatga |
647 |
Q |
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| T |
28608679 |
cttgtatggattaaaacaagcaccaagacaatggtataagaaatttgactcgttcatga |
28608621 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 490 - 624
Target Start/End: Original strand, 14177097 - 14177231
Alignment:
| Q |
490 |
atttcttcatggagatttggaagaggagatttatatggagcaaccagaaggatttgaagtag-ctggaaagaaacacatggtgtgcaaattgaataagag |
588 |
Q |
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| T |
14177097 |
atttcttcatggagatttagatgaagagatctacatggttcaaccagaaggatttg-agaagactcgaaaggagcacttggtttgcaaattgaagaagag |
14177195 |
T |
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| Q |
589 |
tctttatggattgaagcaggcaccaaggcagtggta |
624 |
Q |
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| T |
14177196 |
cttgtatggattaaaacaagcaccaagacaatggta |
14177231 |
T |
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