View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13877_high_7 (Length: 341)
Name: NF13877_high_7
Description: NF13877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13877_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 304; Significance: 1e-171; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 16 - 327
Target Start/End: Original strand, 39576457 - 39576768
Alignment:
| Q |
16 |
gaaaattcttgctgtttggtaaagaggtgaagacactgatgatggattggtttctatggaacttctttggctgaataattttttagggtaagcatggttt |
115 |
Q |
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| T |
39576457 |
gaaaattcttgctgtttggtaaagaggtgaagacactgatgatggattggtttctatggaacttctttggctgaatgattttttagggtaagcatggttt |
39576556 |
T |
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| Q |
116 |
gattcaccaatataaagattcttattttcattcacgtcgatatctgatccacaattgatgaagtatgtctcttgatgatcgtatccgagtgcagggaagt |
215 |
Q |
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| T |
39576557 |
gattcaccaatataaagattcttattttcattcacgtcgatatctgatccacaattgatgaagtatgtctcttgatgatcgtatccgagtgcagggaagt |
39576656 |
T |
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| Q |
216 |
gcagtgatgagaattgaagaagaagaaaagccagtaaaatgatagagtgttgaattgccattgggagagaggaaagttttgtttggttgatgatttttta |
315 |
Q |
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| T |
39576657 |
gtagtgatgagaattgaagaagaagaaaagccagtaaaatgatagagtgttgaattgccattgggagagaggaaagttttgtttggttgatgatttttta |
39576756 |
T |
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| Q |
316 |
agctatgatgat |
327 |
Q |
| |
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|||||||||||| |
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| T |
39576757 |
agctatgatgat |
39576768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 16 - 236
Target Start/End: Original strand, 39521812 - 39522032
Alignment:
| Q |
16 |
gaaaattcttgctgtttggtaaagaggtgaagacactgatgatggattggtttctatggaacttctttggctgaataattttttagggtaagcatggttt |
115 |
Q |
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| T |
39521812 |
gaaaattcttgctgtttggttgagaggtgaagacactggtgattgacttgttactttggagttactttcgctgaataattttttcgggtaagcatggttt |
39521911 |
T |
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| Q |
116 |
gattcaccaatataaagattcttattttcattcacgtcgatatctgatccacaattgatgaagtatgtctcttgatgatcgtatccgagtgcagggaagt |
215 |
Q |
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| T |
39521912 |
gattcaccaatataaaggttgttattttcattcacgtcgatatctgatccacaattgatgaagtatgtgtcttgaggatcgtatccgagtgaggggaatt |
39522011 |
T |
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| Q |
216 |
gcagtgatgagaattgaagaa |
236 |
Q |
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| | ||||||||||||||||| |
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| T |
39522012 |
gtaatgatgagaattgaagaa |
39522032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 23 - 279
Target Start/End: Original strand, 39544612 - 39544862
Alignment:
| Q |
23 |
cttgctgtttggtaaagaggtgaagacactgatgatggattggtttctatggaacttctttggctgaataattttttagggtaagcatggtttgattcac |
122 |
Q |
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|||||||||||||| ||||||||| |||||| |||| || | ||| || |||| ||| || ||||| | |||| ||||||| | |||||||||||| |
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| T |
39544612 |
cttgctgtttggtagagaggtgaaaacactggtgattgacttgttactttggagcttttt---ctgaaacttgtttttgggtaagtagggtttgattcac |
39544708 |
T |
|
| Q |
123 |
caatataaagattcttattttcattcacgtcgatatctgatccacaattgatgaagtatgtctcttgatgatcgtatccgagtgcagggaagtgcagtga |
222 |
Q |
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| T |
39544709 |
caatataaaggttgttattttcattcacgtcaatatctgatccgcaattgatgaagtatgtgtcttggtgatcgtatccgagtgagggaaattgtaatga |
39544808 |
T |
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| Q |
223 |
tgagaattgaagaagaagaaaagccagtaaaatgatagagtgttgaattgccattgg |
279 |
Q |
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|| ||||| ||||||||||||| ||||||||||||| |||||||| ||||||||| |
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| T |
39544809 |
tgcgaatt---gaagaagaaaagcaagtaaaatgatagtgtgttgaactgccattgg |
39544862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 23 - 327
Target Start/End: Original strand, 39525316 - 39525620
Alignment:
| Q |
23 |
cttgctgtttggtaaagaggtgaagacactgatgatggattggtttctatggaacttctttggctgaataattttttagggtaagcatggtttgattcac |
122 |
Q |
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|||||||||||||| |||||||||| |||||||||| || ||||||||||||| ||| | |||||| | |||||||||| |||||||||| | |
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| T |
39525316 |
cttgctgtttggtagagaggtgaaggcactgatgattgactggtttctatggagctttt---gctgaaacttgttttagggtagttggggtttgattccc |
39525412 |
T |
|
| Q |
123 |
caatataaagattcttattttcattcac------gtcgatatctgatccacaattgatgaagtatgtctcttgatgatcgtatccgagtgcagggaagtg |
216 |
Q |
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||||||||| || ||| ||||| | || || | |||||||||||||| ||||||||||| | ||||| | |||||||||||| | ||||||| |
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| T |
39525413 |
caatataaactttattactttcagtaacagtaacgttgctatctgatccacaactgatgaagtatatgtcttgttcatcgtatccgagcgaggggaagta |
39525512 |
T |
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| Q |
217 |
cagtgatgagaattgaagaagaagaaaagccagtaaaatgatagagtgttgaattgccattgggagagaggaaagttttgtttggttgatgattttttaa |
316 |
Q |
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| |||||||||||||| ||||| |||| ||||| ||||||||||||||||||||||| | ||||| |||| || |||||| ||||||||||||||| |
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| T |
39525513 |
taatgatgagaattgaataagaa---aagcaagtaagatgatagagtgttgaattgccatggagagagttgaaaattatgtttgtttgatgattttttaa |
39525609 |
T |
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| Q |
317 |
gctatgatgat |
327 |
Q |
| |
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||||||||||| |
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| T |
39525610 |
gctatgatgat |
39525620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 111 - 183
Target Start/End: Original strand, 39581090 - 39581162
Alignment:
| Q |
111 |
ggtttgattcaccaatataaagattcttattttcattcacgtcgatatctgatccacaattgatgaagtatgt |
183 |
Q |
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| T |
39581090 |
ggtttgattcaccaatataaacgttgttactttcagtaacatcaaaatctgatccgcaattgatgaagtatgt |
39581162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 234 - 285
Target Start/End: Original strand, 39511781 - 39511832
Alignment:
| Q |
234 |
gaagaagaaaagccagtaaaatgatagagtgttgaattgccattgggagaga |
285 |
Q |
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||||||||||| |||||||||||||| |||||||||| |||||||||||| |
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| T |
39511781 |
gaagaagaaaaattagtaaaatgatagactgttgaattgtcattgggagaga |
39511832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 149 - 236
Target Start/End: Original strand, 39581842 - 39581929
Alignment:
| Q |
149 |
acgtcgatatctgatccacaattgatgaagtatgtctcttgatgatcgtatccgagtgcagggaagtgcagtgatgagaattgaagaa |
236 |
Q |
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|||| ||||||| |||||||| ||||||||||| | ||||| | ||||||||| |||| | ||| || | ||||||||||||||||| |
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| T |
39581842 |
acgttgatatcttatccacaactgatgaagtatatgtcttggtcatcgtatccaagtgaggcgaactgtaatgatgagaattgaagaa |
39581929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 220 - 286
Target Start/End: Original strand, 39581202 - 39581265
Alignment:
| Q |
220 |
tgatgagaattgaagaagaagaaaagccagtaaaatgatagagtgttgaattgccattgggagagag |
286 |
Q |
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| T |
39581202 |
tgatgagaattgaag---aagaaaagttagtagaacgatagactgttgaattgccatggggagagag |
39581265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 16 - 71
Target Start/End: Complemental strand, 3331477 - 3331422
Alignment:
| Q |
16 |
gaaaattcttgctgtttggtaaagaggtgaagacactgatgatggattggtttcta |
71 |
Q |
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||||||||||||| |||||||||||||||||| |||||| || |||| ||||||| |
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| T |
3331477 |
gaaaattcttgctctttggtaaagaggtgaaggaactgattattgatttgtttcta |
3331422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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