View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13877_low_1 (Length: 398)
Name: NF13877_low_1
Description: NF13877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13877_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 17 - 287
Target Start/End: Original strand, 34915850 - 34916120
Alignment:
| Q |
17 |
acaacaacctttctcaaaggaataatcaaatggaaatgatggttacaaaccaaaattattttccatttaatatttctcaagaaaccaagcctttgaatag |
116 |
Q |
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| T |
34915850 |
acaacaacctttctcaaaggaataatcaaatggaaatgatggttacaaaccaaaattattttccattcaatatttctcaagaaaccaagcctttgaatag |
34915949 |
T |
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| Q |
117 |
tgttgtaccagatgaagtctcatgcatatcctcagtgaattattacaaaagagttggcatgaacagaaataataaggcatatccttatgcctctaggaag |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34915950 |
tgttgtaccagatgaagtctcatgcatatcctcagtgaattattacaaaagagttggcatgaacagaaataataaggcatatccttatgcctctaggaag |
34916049 |
T |
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| Q |
217 |
cctgagaaagttaaaaagaagatcaactttataaaagggcaatggacagtagaagaagatcggtacataca |
287 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34916050 |
cctgagaaagttaaaaagaagatcaactttataaaagggcaatggacagtagaagaagatcggtacataca |
34916120 |
T |
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