View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13878_high_11 (Length: 419)
Name: NF13878_high_11
Description: NF13878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13878_high_11 |
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Alignment Details
Target: chr3 (Bit Score: 283; Significance: 1e-158; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 96 - 402
Target Start/End: Original strand, 55067744 - 55068050
Alignment:
| Q |
96 |
taaataggaaaaaagaagagagtgtgtatgaacgaacctgtaaatcagcggtgatttcaacgtcggtgatagtggttacggaagagagatataaatcagc |
195 |
Q |
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| T |
55067744 |
taaataggaaaaaagaagagagtatgtatgaacgaacctgtaaatcagcggtgatttcaacgtcggtaatagtggttacggaagagagatataaatcagc |
55067843 |
T |
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| Q |
196 |
acctaaggaagcttctggaagaacggcaaattgcaagacgttatcggtgatgagcatatcagaaagttctctcctaatttgtttggcaaccattttgact |
295 |
Q |
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| T |
55067844 |
acctaaggaagcttctggaagaacggcaaattgcaagacgttatcggtgatgagcatatcagaaagttctctcctaatttgtttggcaaccattttgact |
55067943 |
T |
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| Q |
296 |
ctccttggattagccatacactttatcgttattcttgaagcatttcctgtgagtctctgagtctgaaatatagttgcagttgctgttgctgttgtgcggt |
395 |
Q |
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| T |
55067944 |
ctccttggattagccatacactttatcgttattcttgaagcatttcctgtgagtctctgagtctgaaatatagttacagttgcagttgctgctgtgcggt |
55068043 |
T |
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| Q |
396 |
ggttatt |
402 |
Q |
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| T |
55068044 |
gattatt |
55068050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 12 - 69
Target Start/End: Original strand, 55067678 - 55067735
Alignment:
| Q |
12 |
atgaaaaggcaatgtggcaattaaattcaggtctatgaatttaatatgataataataa |
69 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55067678 |
atgaaaaggcaatgtggcaattaaattcaggtctatgaatttaatatgataataataa |
55067735 |
T |
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