View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13878_high_17 (Length: 349)
Name: NF13878_high_17
Description: NF13878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13878_high_17 |
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Alignment Details
Target: chr5 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 18 - 344
Target Start/End: Original strand, 3919671 - 3919997
Alignment:
| Q |
18 |
cagttaggaatctataaatgaatatatgtagcttacatcttgttccaaggatgctctatgatttgaagaagcattcttgtttatacaattgtggttgtca |
117 |
Q |
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| T |
3919671 |
cagttaggaatctataaatgaatatatgtagcttacatcttgttccaaggatgctctatgatttgaagaagcattcttgtttatacaattgtggttgtca |
3919770 |
T |
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| Q |
118 |
tgcaatggagtttgtatcctagaagcccttgctgaaagtggcgaggcctgttaaaatcatggcaaaaccaacaaatcgtttcaactcacattcagaaaac |
217 |
Q |
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| T |
3919771 |
tgcaatggagtttgtatcctagaagcccttgctgaaagtggcgaggcctgttaaaatcatggcaaaaccaacgaatcgtttcaactcacattcagaaaac |
3919870 |
T |
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| Q |
218 |
atccaaggccaacacagtgcatgtgtcataaaatcattgttttcacaatcttaaatatcacagtttaaaagtaaaaactgcattatagaaagaactcacc |
317 |
Q |
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| T |
3919871 |
acccaaggccaacacagtgcatgtgtcataaaatcattgttttcacaatcttaaatatcacagtttaaaagtaaaaactgcattatagaaagaactcacc |
3919970 |
T |
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| Q |
318 |
agaaactcatcttggtctttccctatg |
344 |
Q |
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||||||||||||||||||||||||||| |
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| T |
3919971 |
agaaactcatcttggtctttccctatg |
3919997 |
T |
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