View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13878_high_18 (Length: 338)
Name: NF13878_high_18
Description: NF13878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13878_high_18 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 16 - 338
Target Start/End: Complemental strand, 1543327 - 1543005
Alignment:
| Q |
16 |
aaattaaccactaacatttgtctataaaccaatttggtacttagttgatataattagaaacaagagaaattacctccataatctttctccttcacattca |
115 |
Q |
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| T |
1543327 |
aaattaaccactaacatttgtctataaaccaatttggtacttagttgatataattagaaacaagagaaattacctccataatctttctccttcacattca |
1543228 |
T |
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| Q |
116 |
aataagaatcaggaagaacccaccgaactttgggtagttctgaaaatttgaaaaacaggaaattaaaaccctttatggtatatagtatataaaagacaaa |
215 |
Q |
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| T |
1543227 |
aataagaatcaggaagaacccaccgaactttgggcagttctgaaaatttgaaaaacaggaaattaaaaccctttatggtatatagtatataaaagacaaa |
1543128 |
T |
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| Q |
216 |
gtttaatgagaattttggaaccatgtatatgtatatacctttgagtttgtaggaaagctcttcagaacaaacagctccaaaagcaaagtagtgtctagtt |
315 |
Q |
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| T |
1543127 |
gtttaatgagaattttggaaccatgtatatgtatataccattgagtttgtaggaaagctcttcagaacaaacagctccaaaagcaaagtagtgtctagtt |
1543028 |
T |
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| Q |
316 |
gaaacagaatatatattcttcct |
338 |
Q |
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| T |
1543027 |
gaaacagaatatatattcttcct |
1543005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 139; Significance: 1e-72; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 75 - 329
Target Start/End: Complemental strand, 32425391 - 32425136
Alignment:
| Q |
75 |
acaagagaaattacctccataatctttctccttcacattcaaataagaatcaggaagaacccaccgaactttgggtagttctgaaaatttgaaaaacagg |
174 |
Q |
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| T |
32425391 |
acaagagaaattacctccataatctttctcctccacattcaaataagaatcaggaagaacccaccgaactttgggaagttctgcaaatttgaaaaacagg |
32425292 |
T |
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| Q |
175 |
aaattaaaaccctttatggtat-atagtatataaaag----acaaagtttaatg--agaattttggaaccatgtatatgtatatacctttgagtttgtag |
267 |
Q |
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| T |
32425291 |
aaattaaaaccctttatggtataatatactacaaaaggcaaacaaaatttaaagaaatatttttggaatc------atgtatatacctttgagtttgtcg |
32425198 |
T |
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| Q |
268 |
gaaagctcttcagaacaaacagctccaaaagcaaagtagtgtctagttgaaacagaatatat |
329 |
Q |
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| T |
32425197 |
cgaagctcttcagaacaaagagctccaaaagcaaagtagtgtctagttgaaacagaatatat |
32425136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 247 - 338
Target Start/End: Complemental strand, 32420535 - 32420444
Alignment:
| Q |
247 |
tatatacctttgagtttgtaggaaagctcttcagaacaaacagctccaaaagcaaagtagtgtctagttgaaacagaatatatattcttcct |
338 |
Q |
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| T |
32420535 |
tatatacctttcagtttgtaggaaagctcttcagaacaaagagctccaaaagcaaagtagtgtctagttgaaacagaatatatgctcttcct |
32420444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 85 - 157
Target Start/End: Complemental strand, 32420694 - 32420622
Alignment:
| Q |
85 |
ttacctccataatctttctccttcacattcaaataagaatcaggaagaacccaccgaactttgggtagttctg |
157 |
Q |
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| T |
32420694 |
ttacctccataatctttctccctcacattcaaataagaatcaggaagaacccatcgaaccttgggcagttctg |
32420622 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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