View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13878_high_2 (Length: 716)
Name: NF13878_high_2
Description: NF13878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13878_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 658; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 658; E-Value: 0
Query Start/End: Original strand, 19 - 704
Target Start/End: Complemental strand, 44342978 - 44342294
Alignment:
| Q |
19 |
ctagcggtggcgaatctggcttatttctcaatcaatctatgtgtattcttgataccaaggttccttccaagagcttttgagaggtatttccaagaaagag |
118 |
Q |
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| T |
44342978 |
ctagcggtggcgaatctggcttatttctcaatcaatctatgtgtattcttgataccaaggttccttccaagagcttttgagaggtatttccaagaaagag |
44342879 |
T |
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| Q |
119 |
gagagatttatgccaagagtgcagaagataagcgatctgtgtctctcaacaaaccccaattatcagagaagaagatggattaagattaattaagagatag |
218 |
Q |
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| T |
44342878 |
gagagatttatgccaagagtgcagaagataagcgatctgtgtctctcaacaaaccccaattatcagagaagaagatggattaagattaattaagagatag |
44342779 |
T |
|
| Q |
219 |
ctttatcatatagcttgtctttcaagtaattttatacagtttagaatttctcttggaaaatggatagttaatcaatgtatatgatatcttagccttgact |
318 |
Q |
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| T |
44342778 |
ctttatcatatagcttgtctttcaagtaattttatacagtttagaatttctcttggaaaatggatagttaatcaatgtatatgatatcttagccttgact |
44342679 |
T |
|
| Q |
319 |
caatatgctctctccattagataatatatggaaattatatatagcctggtttttggacaaatttgtggtgacaactctatgttgcatagcatataatacc |
418 |
Q |
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| T |
44342678 |
taatatgctctctccattagataatatatggaaattatatatagcctggtttttggacaaatttgtggtgacaactctatgttgcatagcatataatatc |
44342579 |
T |
|
| Q |
419 |
caacaatttgaagccatgccattttttatatttaattattggtttaattgcatctttgttcccctaatttattttgaagtttaaacaaacatattcatta |
518 |
Q |
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| T |
44342578 |
caacaatttgaagccatgccattttttatatttaattattggtttaattgcatctttgttcccctaatttattttgaagtttaaacaaacatattcatta |
44342479 |
T |
|
| Q |
519 |
aggaaaacagatcattatagatagattcaactagtgttgtaatattctccatccacctttttaaaactaacataaataaccaaacaaacttcaagtctcc |
618 |
Q |
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|||| |||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44342478 |
aggagaacagatcattatagatagattcagctagtgttgtaatattctctatccacctttttaaaactaacataaataaccaaacaaacttcaagtctcc |
44342379 |
T |
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| Q |
619 |
aaacaacaagtaagacatttaagaggtcgtaacttaaaaggaggttatcaaattaatatccaaagtctaacacctatactgatatt |
704 |
Q |
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| T |
44342378 |
-aacaacaagtaagacatttaagaggtcgtaacttaaaaggaggttatcaaattaatatccaaagtctaacacctatactgatatt |
44342294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 3e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 25 - 131
Target Start/End: Complemental strand, 39474349 - 39474243
Alignment:
| Q |
25 |
gtggcgaatctggcttatttctcaatcaatctatgtgtattcttgataccaaggttccttccaagagcttttgagaggtatttccaagaaagaggagaga |
124 |
Q |
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||||| ||||||| ||||||||| |||||||| | || |||||||| ||||||||||||||||||||||| |||||||||||||||| || || |||| |
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| T |
39474349 |
gtggctaatctggtttatttctccatcaatctctttgggttcttgattccaaggttccttccaagagctttcaagaggtatttccaagagaggggggaga |
39474250 |
T |
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| Q |
125 |
tttatgc |
131 |
Q |
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||||||| |
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| T |
39474249 |
tttatgc |
39474243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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