View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13878_high_23 (Length: 279)

Name: NF13878_high_23
Description: NF13878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13878_high_23
NF13878_high_23
[»] chr3 (2 HSPs)
chr3 (19-271)||(15002379-15002631)
chr3 (28-99)||(15002139-15002210)
[»] chr7 (2 HSPs)
chr7 (28-90)||(17944565-17944627)
chr7 (24-101)||(37223830-37223907)
[»] chr2 (1 HSPs)
chr2 (30-101)||(23974903-23974974)
[»] chr1 (1 HSPs)
chr1 (28-90)||(4119115-4119177)
[»] chr8 (2 HSPs)
chr8 (28-101)||(21373446-21373519)
chr8 (28-89)||(24196171-24196232)
[»] chr5 (2 HSPs)
chr5 (47-90)||(15226180-15226223)
chr5 (26-90)||(22587024-22587088)
[»] chr4 (4 HSPs)
chr4 (46-101)||(7833802-7833857)
chr4 (30-79)||(18977185-18977234)
chr4 (28-101)||(38978713-38978786)
chr4 (26-86)||(19987937-19987997)
[»] scaffold0251 (1 HSPs)
scaffold0251 (26-86)||(12598-12658)


Alignment Details
Target: chr3 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 19 - 271
Target Start/End: Original strand, 15002379 - 15002631
Alignment:
Q  19 aaaacgtaatgttaggagttctatatcgagtagataaaagtgctcgacgtagtacttaagccatgaggctctatcacctaatgacttatcaattatcata 118  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15002379 aaaacgtaatgttaggagttctatatcgagtagttaaaagtgctcgacgtagtacttaagccatgaggctctatcacctaatgacttatcaattatcata 15002478  T
Q  119 gtataaaaaggaacttgtatctctctaccattttcgaaaaagaatgctgaaagagcagagcatcctggacctccaacgaaccaaagtaatattggatcaa 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  15002479 gtataaaaaggaacttgtatctctctaccattttcgaaaaagaatgctgaaagagcagagcatcctggacctccaacgaaccaaagtaaaattggatcaa 15002578  T
Q  219 caaagggatttctttgagactccacaaaatagtaaaacatttgcacctttgct 271  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15002579 caaagggatttctttgagactccacaaaatagtaaaacatttgcacctttgct 15002631  T

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Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 28 - 99
Target Start/End: Original strand, 15002139 - 15002210
Alignment:
Q  28 tgttaggagttctatatcgagtagataaaagtgctcgacgtagtacttaagccatgaggctctatcacctaa 99  Q
    ||||| ||||||||||||||||||||||||||| ||||||| || |||||| |||||| |||| ||||||||    
T  15002139 tgttatgagttctatatcgagtagataaaagtgttcgacgtggtgcttaagtcatgagcctctttcacctaa 15002210  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 28 - 90
Target Start/End: Original strand, 17944565 - 17944627
Alignment:
Q  28 tgttaggagttctatatcgagtagataaaagtgctcgacgtagtacttaagccatgaggctct 90  Q
    |||||||||| | | ||||||||||||||||||||||| || |||||||||||||||||||||    
T  17944565 tgttaggagtcccacatcgagtagataaaagtgctcgatgtggtacttaagccatgaggctct 17944627  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 101
Target Start/End: Original strand, 37223830 - 37223907
Alignment:
Q  24 gtaatgttaggagttctatatcgagtagataaaagtgctcgacgtagtacttaagccatgaggctctatcacctaatg 101  Q
    ||||||| |||||| | | || |||||||||||||||||| | |  |||||||||||||||| ||||  |||||||||    
T  37223830 gtaatgtaaggagtcccacattgagtagataaaagtgctcaatgaggtacttaagccatgagactctcccacctaatg 37223907  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 30 - 101
Target Start/End: Original strand, 23974903 - 23974974
Alignment:
Q  30 ttaggagttctatatcgagtagataaaagtgctcgacgtagtacttaagccatgaggctctatcacctaatg 101  Q
    |||||||||| | ||||||||| ||||||||||| | || |||||||||||||||| |||| ||||||||||    
T  23974903 ttaggagttccacatcgagtagttaaaagtgctcaatgtggtacttaagccatgagactctttcacctaatg 23974974  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 28 - 90
Target Start/End: Original strand, 4119115 - 4119177
Alignment:
Q  28 tgttaggagttctatatcgagtagataaaagtgctcgacgtagtacttaagccatgaggctct 90  Q
    |||||||||| | | |||||||||||||||||| ||||| | |||||||||||||||||||||    
T  4119115 tgttaggagtcccacatcgagtagataaaagtgttcgacatggtacttaagccatgaggctct 4119177  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 28 - 101
Target Start/End: Complemental strand, 21373519 - 21373446
Alignment:
Q  28 tgttaggagttctatatcgagtagataaaagtgctcgacgtagtacttaagccatgaggctctatcacctaatg 101  Q
    |||||||| ||||| ||||||||||||||||||||| || | |||||||| ||||| ||||||  |||||||||    
T  21373519 tgttaggatttctacatcgagtagataaaagtgctcaacatggtacttaatccatgcggctcttccacctaatg 21373446  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 89
Target Start/End: Complemental strand, 24196232 - 24196171
Alignment:
Q  28 tgttaggagttctatatcgagtagataaaagtgctcgacgtagtacttaagccatgaggctc 89  Q
    |||||||||||| | ||||| |||||||||||  ||||||| || ||||||| |||||||||    
T  24196232 tgttaggagttccacatcgattagataaaagttatcgacgtggtgcttaagctatgaggctc 24196171  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 47 - 90
Target Start/End: Complemental strand, 15226223 - 15226180
Alignment:
Q  47 agtagataaaagtgctcgacgtagtacttaagccatgaggctct 90  Q
    ||||||||||||||| |||||| |||||||||| ||||||||||    
T  15226223 agtagataaaagtgcccgacgtggtacttaagctatgaggctct 15226180  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 90
Target Start/End: Complemental strand, 22587088 - 22587024
Alignment:
Q  26 aatgttaggagttctatatcgagtagataaaagtgctcgacgtagtacttaagccatgaggctct 90  Q
    ||||||| |||| | | ||||||||  |||||||| | || ||||||||||||||||||||||||    
T  22587088 aatgttacgagtcccacatcgagtaactaaaagtgtttgatgtagtacttaagccatgaggctct 22587024  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 46 - 101
Target Start/End: Complemental strand, 7833857 - 7833802
Alignment:
Q  46 gagtagataaaagtgctcgacgtagtacttaagccatgaggctctatcacctaatg 101  Q
    ||||||||||||||||| || || ||||||||| |||||||||||  |||||||||    
T  7833857 gagtagataaaagtgcttgatgtggtacttaagtcatgaggctctcccacctaatg 7833802  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 79
Target Start/End: Original strand, 18977185 - 18977234
Alignment:
Q  30 ttaggagttctatatcgagtagataaaagtgctcgacgtagtacttaagc 79  Q
    |||||||| | |||||||| ||||||||||| ||||||| ||||||||||    
T  18977185 ttaggagtcccatatcgagcagataaaagtgttcgacgtggtacttaagc 18977234  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 101
Target Start/End: Original strand, 38978713 - 38978786
Alignment:
Q  28 tgttaggagttctatatcgagtagataaaagtgctcgacgtagtacttaagccatgaggctctatcacctaatg 101  Q
    |||||||||| | | || ||||||||||||||| | || || |||||||| ||||||||||||  |||||||||    
T  38978713 tgttaggagtcccacatggagtagataaaagtgtttgatgtggtacttaaaccatgaggctcttccacctaatg 38978786  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 86
Target Start/End: Original strand, 19987937 - 19987997
Alignment:
Q  26 aatgttaggagttctatatcgagtagataaaagtgctcgacgtagtacttaagccatgagg 86  Q
    |||||||||||| | | ||||||||||| ||| |||| || || |||||||||||||||||    
T  19987937 aatgttaggagtcccacatcgagtagatcaaaatgcttgatgtggtacttaagccatgagg 19987997  T

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Target: scaffold0251 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 86
Target Start/End: Original strand, 12598 - 12658
Alignment:
Q  26 aatgttaggagttctatatcgagtagataaaagtgctcgacgtagtacttaagccatgagg 86  Q
    |||||||||||| | | ||||||||||| |||||||| || ||  ||||||||||||||||    
T  12598 aatgttaggagtcccacatcgagtagatcaaagtgcttgatgtgttacttaagccatgagg 12658  T

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