View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13878_high_26 (Length: 265)
Name: NF13878_high_26
Description: NF13878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13878_high_26 |
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Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 20 - 254
Target Start/End: Complemental strand, 54080489 - 54080255
Alignment:
| Q |
20 |
ggtggtgccactgtcagttccctaagttttgtataaggtaatagtggtatatatatcattaactttttgttgcatggtgaccaatttgcacttagattac |
119 |
Q |
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| T |
54080489 |
ggtggtgccactgtcagtctcctaagttttgtataaggtaatagtggtatatatatcattaactttttgttgcatggtgaccaatttgcacttagattac |
54080390 |
T |
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| Q |
120 |
tatatctaggtgttcattcttatacatggttcaagaatgctattatatttacccttctgagagtgacttactcagtgggggatcattgatcatttctgaa |
219 |
Q |
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| T |
54080389 |
tatatctaggtgttcattcttatacaaggttcaagaatgctattatatttacccttctgagagtgacttactcagtaggggatcattgatcatttctgaa |
54080290 |
T |
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| Q |
220 |
ctcttcttttggattcatttgttaatgatcatatt |
254 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
54080289 |
ctcttcttttggattcatttgttaatgatcatatt |
54080255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 46 - 165
Target Start/End: Complemental strand, 54083669 - 54083555
Alignment:
| Q |
46 |
ttttgtataaggtaatagtggtatatatatcattaactttttgttgcatggtgaccaatttgcacttagattactatatctaggtgttcattcttataca |
145 |
Q |
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| T |
54083669 |
ttttgtataagctagtagtggt----atatcattaactttttgttgcatgatgatcaatttgcacctagattactatatct-ggtgctcattcttatgga |
54083575 |
T |
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| Q |
146 |
tggttcaagaatgctattat |
165 |
Q |
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| T |
54083574 |
aggttcaagaatgcttttat |
54083555 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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