View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13878_high_28 (Length: 262)
Name: NF13878_high_28
Description: NF13878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13878_high_28 |
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| [»] chr6 (2 HSPs) |
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| [»] scaffold0005 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 165; Significance: 2e-88; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 18 - 262
Target Start/End: Complemental strand, 32338755 - 32338511
Alignment:
| Q |
18 |
tgtacacctcattggtactcttttagatgtataagacaaataattctatagtttgttcggaaannnnnnnatttattgtaattttaaagtattcggtact |
117 |
Q |
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| T |
32338755 |
tgtacacctcattggtactcttttagatgtataagacaaataattctatagtttgttcgtagaaatttttatttattgtaattttaatgtatctaatatt |
32338656 |
T |
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| Q |
118 |
aaatttaacgcacatgttaatcattctagataaatttagtacggg-tgttacaacttgcacatgctaattttttcatgtttgaacctacttctttcacac |
216 |
Q |
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| T |
32338655 |
aaatttaacgcacatgttaattattctagataaatttaatatggggtgttacaacttgcacatgctaattttttcatgtttgaacctacttctttcaca- |
32338557 |
T |
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| Q |
217 |
aaaaaacttgtgttattttctatttttatttttccattctccctcc |
262 |
Q |
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| T |
32338556 |
aaaaaacttgtgttattttctatttttatttttccattctccctcc |
32338511 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 121 - 169
Target Start/End: Original strand, 31130981 - 31131029
Alignment:
| Q |
121 |
tttaacgcacatgttaatcattctagataaatttagtacgggtgttaca |
169 |
Q |
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| T |
31130981 |
tttaacgcacatgctaaatattctagataaatttagtatgtgtgttaca |
31131029 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 93 - 169
Target Start/End: Original strand, 19078987 - 19079062
Alignment:
| Q |
93 |
ttgtaattttaaagtattcggtactaaatttaacgcacatgttaatcattctagataaatttagtacgggtgttaca |
169 |
Q |
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| T |
19078987 |
ttgtaattttaatgtatccagtactaagtt-aacgcacatgctaaatattctagataaatttagtatgggtgttaca |
19079062 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 93 - 169
Target Start/End: Original strand, 19079231 - 19079306
Alignment:
| Q |
93 |
ttgtaattttaaagtattcggtactaaatttaacgcacatgttaatcattctagataaatttagtacgggtgttaca |
169 |
Q |
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| T |
19079231 |
ttgtaattttaatgtatccagtactaagtt-aacgcacatgctaaatattctagataaatttagtatgggtgttaca |
19079306 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 93 - 169
Target Start/End: Complemental strand, 8677929 - 8677853
Alignment:
| Q |
93 |
ttgtaattttaaagtattcggtactaaatttaacgcacatgttaatcattctagataaatttagtacgggtgttaca |
169 |
Q |
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| T |
8677929 |
ttgtaattttaatgtatcaagtactaagtttaacgcacatgctaaatattctagataaatttagtatgggttttaca |
8677853 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0005 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 93 - 169
Target Start/End: Complemental strand, 36005 - 35931
Alignment:
| Q |
93 |
ttgtaattttaaagtattcggtactaaatttaacgcacatgttaatcattctagataaatttagtacgggtgttaca |
169 |
Q |
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| T |
36005 |
ttgtaattttaatgtatccagtac--aagttaacacacatgctaaatattctagataaatttagtatgggtgttaca |
35931 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 93 - 169
Target Start/End: Original strand, 14803722 - 14803796
Alignment:
| Q |
93 |
ttgtaattttaaagtattcggtactaaatttaacgcacatgttaatcattctagataaatttagtacgggtgttaca |
169 |
Q |
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| T |
14803722 |
ttgtaattttaatgtatccagtac--aagttaacacacatgctaaatattctagataaatttagtatgggtgttaca |
14803796 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 118 - 158
Target Start/End: Complemental strand, 17282147 - 17282107
Alignment:
| Q |
118 |
aaatttaacgcacatgttaatcattctagataaatttagta |
158 |
Q |
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| T |
17282147 |
aaatataacgcacatgttaaatattctagataaatttagta |
17282107 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 140 - 172
Target Start/End: Complemental strand, 1454564 - 1454532
Alignment:
| Q |
140 |
attctagataaatttagtacgggtgttacaact |
172 |
Q |
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| T |
1454564 |
attctagataaatttagtatgggtgttacaact |
1454532 |
T |
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