View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13878_high_3 (Length: 569)
Name: NF13878_high_3
Description: NF13878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13878_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 535; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 535; E-Value: 0
Query Start/End: Original strand, 1 - 551
Target Start/End: Original strand, 52175631 - 52176181
Alignment:
| Q |
1 |
tagaaacttaaaatactagaaatgagactgtgccccgaaacaagtaataatggcatcaaagcttcacaagtttgctataatcaagaaaaattattctcta |
100 |
Q |
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| T |
52175631 |
tagaaacttaaaatactagaaatgagactgcgccccgaaacaagtaataatggcatcaaagcttcacaagtttgctataatcaagaaaaattattctcta |
52175730 |
T |
|
| Q |
101 |
ttcaacaaataaccatctcttgtgcttgtgccactccccctccccttcaaagtccctaattaattatgtaaaaaagtatgtggctgcaagataggggagt |
200 |
Q |
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| T |
52175731 |
ttcaacaaataaccatctcttgtgcttgtgccactccccctccccttcaaagtccctaattaattatgtaaaaaagtatgtggctgcaagataggggagt |
52175830 |
T |
|
| Q |
201 |
gtcgtgtgcggacagctgtcccaattgcgagactaattatgaaaatgattggcacgtgtttattggttgcgaggctgcaatacaagtttggcaagtagct |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
52175831 |
gtcgtgtgcggacagctgtcccaattgcgagactaattatgaaaatgattggcacgtgtttattggttgcgaggctgcaatacaagtttggcaagcagct |
52175930 |
T |
|
| Q |
301 |
gggctatgggatataataatggatgctgctgctgctgtatctaactttgctgaatgcattttttagttattatgcaggtgttctaaacaaatgtgtcagg |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
52175931 |
gggctatgggatataataatggatgctgctgctgctgtatctaactttgctgaatgcattttttagttattatgcaggtgttctaaacaaatgtgccagg |
52176030 |
T |
|
| Q |
401 |
acattgtaataatgttatggtgcttgtggcgtcgacaaaacgataaggtgtgggagggagacatgaaagatgtgcggctggctgtgcatttagcgcgcga |
500 |
Q |
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| T |
52176031 |
acattgtaataatgttatggtgcttgtggcgtcgacaaaacgataaggtgtgggagggagacatgaaagatgtgcggctggctgtgcatttagcgcgcga |
52176130 |
T |
|
| Q |
501 |
ggttctgaaacagtggcagactgttcgggagaaaacggttcagcagcaaca |
551 |
Q |
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| T |
52176131 |
ggttctgaaacaatggcagactgttcgggagaaaacggttcagcagcaaca |
52176181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 208; Significance: 1e-113; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 176 - 545
Target Start/End: Original strand, 25500231 - 25500596
Alignment:
| Q |
176 |
gtatgtggctgcaagataggggagtgtcgtgtgcggacagctgtcccaattgcgagactaattatgaaaatgattggcacgtgtttattggttgcgaggc |
275 |
Q |
| |
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||||| |||||||||||||||||||||||||| |||| ||||| | || |||||||||||||||||||||||||||||||||||||||||| || ||||| |
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| T |
25500231 |
gtatgcggctgcaagataggggagtgtcgtgtacggatagctgcctca-ttgcgagactaattatgaaaatgattggcacgtgtttattggctgtgaggc |
25500329 |
T |
|
| Q |
276 |
tgcaatacaagtttggcaagtagctgggctatgggatataataatggatgctgctgctgctgtatctaactttgctgaatgcattttttagttattatgc |
375 |
Q |
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||||| |||||| ||||||||||||||||||||||||||||||||||| |||| ||||| | ||||| ||||||||||| |||||| ||||||||||| |
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| T |
25500330 |
tgcaaaacaagtgtggcaagtagctgggctatgggatataataatggaagctgttgctgtt---tctaattttgctgaatgtatttttcagttattatgc |
25500426 |
T |
|
| Q |
376 |
aggtgttctaaacaaatgtgtcaggacattgtaataatgttatggtgcttgtggcgtcgacaaaacgataaggtgtgggagggagacatgaaagatgtgc |
475 |
Q |
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|||||||||||||| | ||| || ||||||| ||| || |||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| |
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| T |
25500427 |
aggtgttctaaacagaagtgccacgacattgcaatgatattatggtgcttgtggcgtcgacgaaacgataaggtgtgggagggagaaatgaaagatgtgc |
25500526 |
T |
|
| Q |
476 |
ggctggctgtgcatttagcgcgcgaggttctgaaacagtggcagactgttcgggagaaaacggttcagca |
545 |
Q |
| |
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| T |
25500527 |
agatggctgtgtatttagcgcgagaggttcttaagcagtggcaggttgttcaagagaaaacagttcagca |
25500596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 9e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 224 - 499
Target Start/End: Complemental strand, 6508829 - 6508555
Alignment:
| Q |
224 |
attgcgagactaattatgaaaatgattggcacgtgtttattggttgcgaggctgcaatacaagtttggcaagtagctgggctatgggatataataatgga |
323 |
Q |
| |
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||||||||| || || ||||||||||| ||| | |||| |||||||||||||| | || ||| |||||||| ||||| || |||| || || || |
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| T |
6508829 |
attgcgagaatagttgcgaaaatgattgacactgggttataggttgcgaggctgccaaactagtgtggcaagttgctggcctgcgggaattagtatgaga |
6508730 |
T |
|
| Q |
324 |
tgctgctgctgctgtatctaactttgctgaatgcattttttagttattatgcaggtgttctaaacaaatgtgtcaggacattgtaataatgttatggtgc |
423 |
Q |
| |
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|||||||||||||| ||||||||||| |||||||||||| |||||| |||||| |||| | |||| ||||| || || | || ||||||||||| |
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| T |
6508729 |
cgctgctgctgctgtttctaactttgcagaatgcatttttcggttattgtgcagg-gttccgatcaaacatgtcaagatatcgcgatgatgttatggtgt |
6508631 |
T |
|
| Q |
424 |
ttgtggcgtcgacaaaacgataaggtgtgggagggagacatgaaagatgtgcggctggctgtgcatttagcgcgcg |
499 |
Q |
| |
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|| |||||| || || |||| |||| ||| || || |||||||| |||||||||| |||||||||||| |||| |
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| T |
6508630 |
ttatggcgtagaaggaataataaagtgtaggaaggtgatatgaaagaagtgcggctggttgtgcatttagctcgcg |
6508555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 235 - 311
Target Start/End: Complemental strand, 38196388 - 38196312
Alignment:
| Q |
235 |
aattatgaaaatgattggcacgtgtttattggttgcgaggctgcaatacaagtttggcaagtagctgggctatggga |
311 |
Q |
| |
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||||| || |||||| ||||||| ||||||||||| || || |||| |||||||||||||| |||||| ||||||| |
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| T |
38196388 |
aattacgagaatgataggcacgtctttattggttgtgaagcggcaaagcaagtttggcaagttgctgggttatggga |
38196312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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