View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13878_low_1 (Length: 727)
Name: NF13878_low_1
Description: NF13878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13878_low_1 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 433; Significance: 0; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 19 - 644
Target Start/End: Original strand, 1883617 - 1884245
Alignment:
| Q |
19 |
tgaatgctataggttcatttgcaaaaattattttatgaagatgctaaatctaaattattatagcaacgaaggtgtcattttcactgttgtttgtataat- |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |
|
|
| T |
1883617 |
tgaatgctataggttcatttgcaaaaattattttatgaagatgctaaatctaaattattatagaaacgaaggtgtcattttcaccgttgtttgtataatt |
1883716 |
T |
|
| Q |
118 |
atatcatgaacctaatatgggcccaatttttcatgcaaatggtagcaacataatactaactaattaacaaaatgtttgagatattatgccaacaccatca |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
1883717 |
atatcatgaacctaatatgggcccaatttttcatgcaaatggtagcaacataatactaactaattaacaaaatgtttgatatattatgccaacaccatca |
1883816 |
T |
|
| Q |
218 |
tga-------gtaacatgactaataacaatataatagtaagcaagtctttgatatatattaatttaagacaatcagctttaacttttattttggtttttg |
310 |
Q |
| |
|
||| ||||||||||||| |||||||||||||||||||||| | ||||||||||||||||||||||| |||||||||||||||||||||||| | |
|
|
| T |
1883817 |
tgactcatgagtaacatgactaaaaacaatataatagtaagcaagtgt--gatatatattaatttaagacaatgagctttaacttttattttggtttt-g |
1883913 |
T |
|
| Q |
311 |
attaaacaattgtccaactcagaacatcatcaaaagcatctaacaacattctgaacttcaacaaggtttgtgattgttgtgtatgggataaaacttagaa |
410 |
Q |
| |
|
|||| | || |||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| |
|
|
| T |
1883914 |
attata--atggtccaactcaaaacctcatcaaaagcatctaacaacattctgaacttcaacaaggtttgtgattgttgtatataggataaaacttagaa |
1884011 |
T |
|
| Q |
411 |
tacatagaaaaatgacaagaaaatggtccttttacatggattgtctaccaattgtggtgattataggcaatgaatgtgttgacatggctttactcacttt |
510 |
Q |
| |
|
||||||||| |||||||||||| |||||||||||||||||| ||| ||| ||| |||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
1884012 |
cacatagaaagatgacaagaaaacggtccttttacatggattttctgccacctgttgtgattataggcaatgaatgtgttgacatggctttactgacttt |
1884111 |
T |
|
| Q |
511 |
gttcaaagcagctacacttcaagggatgaacaatcatgtctttgttgcctatgcttatgctattggtactgctattctccttcctatcacnnnnnnnaga |
610 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| || |||||||||||||||| ||| |
|
|
| T |
1884112 |
gttcaaagcagctacacttcaagggatgaacaatcatgtctttgttgcctatgcttatgctgttgcaacttcttttctccttcctatcactttttttaga |
1884211 |
T |
|
| Q |
611 |
agaaggtaagtttgtcagaatcacggtgttagaa |
644 |
Q |
| |
|
|||||||||||||| |||||||||| ||||||| |
|
|
| T |
1884212 |
agaaggtaagtttgacagaatcacgacgttagaa |
1884245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 358 - 727
Target Start/End: Original strand, 1890602 - 1890972
Alignment:
| Q |
358 |
attctgaacttcaacaaggtttgtgattgttgtgtatgggataaaacttagaatacatagaaaa-atgacaagaaaatggtccttttacatggattgtct |
456 |
Q |
| |
|
||||||||||||| || ||||||||||||||||| |||| ||||||||| || |||||| |||| ||||| |||||||||||||| |||| | | |
|
|
| T |
1890602 |
attctgaacttcagcagaatttgtgattgttgtgtaactgatagaacttagaagtcagagaaaatatgagaagaagatggtccttttacaaggatgtttt |
1890701 |
T |
|
| Q |
457 |
accaattgtggtgattataggcaatgaatgtgttgacatggctttactcactttgttcaaagcagctacacttcaagggatgaacaatcatgtctttgtt |
556 |
Q |
| |
|
||| ||||||||| ||||| | ||| | |||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
1890702 |
gccacctgtggtgatcataggacaggaaactattgaaatggctttactcactttgttcaaagcagccacacttcaagggatgaacaatcatgtctttgtt |
1890801 |
T |
|
| Q |
557 |
gcctatgcttatgctattggtactgctattctccttcctatcacnnnnnnnagaagaaggtaagtttgtcagaatcacggtgttagaacaacatatgtat |
656 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1890802 |
gcctatgcttatgctattggtactgctattctccttcctatcactttttttagaagaaggtaagtttgtcagaatcacggtgttagaacaacatatgtat |
1890901 |
T |
|
| Q |
657 |
ataacaacttagtacatgtttagattgacggtaaatttgtcaggttcatcacactgtaccatcgagatttt |
727 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
1890902 |
acaacaacttagtacatgtttagattgacggtaaatttgtcaggttcatcacactgtaccatcaagatttt |
1890972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 123; E-Value: 8e-63
Query Start/End: Original strand, 358 - 600
Target Start/End: Original strand, 1877947 - 1878189
Alignment:
| Q |
358 |
attctgaacttcaacaaggtttgtgattgttgtgtatgggataaaacttagaatacatagaaaaatgacaagaaaatggtccttttacatggattgtcta |
457 |
Q |
| |
|
|||||||| |||||||||||||| ||||||||||| || ||| |||||| || ||||||||| |||||||||| |||||||||||||||||||| |||| |
|
|
| T |
1877947 |
attctgaatttcaacaaggtttgccattgttgtgtaaggtatagaacttaaaacacatagaaagatgacaagaagatggtccttttacatggattttcta |
1878046 |
T |
|
| Q |
458 |
ccaattgtggtgattataggcaatgaatgtgttgacatggctttactcactttgttcaaagcagctacacttcaagggatgaacaatcatgtctttgttg |
557 |
Q |
| |
|
||||||||||||||| | ||||||||| |||| |||||||| ||| ||| | ||||||||| |||||||||||||||||||| |||| ||||||| |
|
|
| T |
1878047 |
ccaattgtggtgattgcaagcaatgaattcagtgacgtggctttagtcattttatacaaagcagccacacttcaagggatgaacaactatgtttttgttg |
1878146 |
T |
|
| Q |
558 |
cctatgcttatgctattggtactgctattctccttcctatcac |
600 |
Q |
| |
|
|||||||||||||| |||||||| || |||||||||||||||| |
|
|
| T |
1878147 |
cctatgcttatgctgttggtacttctgttctccttcctatcac |
1878189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 103; E-Value: 7e-51
Query Start/End: Original strand, 363 - 580
Target Start/End: Original strand, 1910913 - 1911131
Alignment:
| Q |
363 |
gaacttcaacaaggttt-gtgattgttgtgtatgggataaaacttagaatacatagaaaaatgacaagaaaatggtccttttacatggattgtctaccaa |
461 |
Q |
| |
|
|||||||||||| |||| |||||||||||||| || | ||| ||||| | ||||| |||||||||| ||||||||| ||||||||| ||| ||| |
|
|
| T |
1910913 |
gaacttcaacaaagttttgtgattgttgtgtaactgaaagaacatagaagtgacagaaacatgacaagaagatggtccttgtacatggatgttctgccac |
1911012 |
T |
|
| Q |
462 |
ttgtggtgattataggcaatgaatgtgttgacatggctttactcactttgttcaaagcagctacacttcaagggatgaacaatcatgtctttgttgccta |
561 |
Q |
| |
|
|| ||||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || |
|
|
| T |
1911013 |
ctgctgtgattatatgctatgaatgtattgacatggctttactcactttgttcaaagcagctacacttcaagggatgaacaatcatgtctttattgctta |
1911112 |
T |
|
| Q |
562 |
tgcttatgctattggtact |
580 |
Q |
| |
|
|||||||||| |||||||| |
|
|
| T |
1911113 |
tgcttatgctgttggtact |
1911131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 416 - 577
Target Start/End: Original strand, 1901922 - 1902083
Alignment:
| Q |
416 |
agaaaaatgacaagaaaatggtccttttacatggattgtctaccaattgtggtgattataggcaatgaatgtgttgacatggctttactcactttgttca |
515 |
Q |
| |
|
||||| |||||||||| |||||| ||||||||||| | | ||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
1901922 |
agaaacatgacaagaagatggtcactttacatggatgttttgccacctgtggtgattataggcaatgaatgttctgacatggctttactcactttgttca |
1902021 |
T |
|
| Q |
516 |
aagcagctacacttcaagggatgaacaatcatgtctttgttgcctatgcttatgctattggt |
577 |
Q |
| |
|
|||| | |||||||||||||||||||| ||||||||| |||| |||||||||||| ||||| |
|
|
| T |
1902022 |
aagctgtaacacttcaagggatgaacaaccatgtctttattgcttatgcttatgctgttggt |
1902083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 414 - 600
Target Start/End: Original strand, 1895509 - 1895695
Alignment:
| Q |
414 |
atagaaaaatgacaagaaaatggtccttttacatggattgtctaccaattgtggtgattataggcaatgaatgtgttgacatggctttactcactttgtt |
513 |
Q |
| |
|
||||||| |||||||||| ||||||||||||||||||| | | |||||| | ||||| ||||| | ||| | |||| |||||||||||||||||||| |
|
|
| T |
1895509 |
atagaaacatgacaagaagatggtccttttacatggatgttttgccaattttagtgatcataggacaggaaactattgaaatggctttactcactttgtt |
1895608 |
T |
|
| Q |
514 |
caaagcagctacacttcaagggatgaacaatcatgtctttgttgcctatgcttatgctattggtactgctattctccttcctatcac |
600 |
Q |
| |
|
||||||||| ||| ||||||||||||||| |||||||||||||| ||| |||||||| |||||||| || |||| |||||| |||| |
|
|
| T |
1895609 |
caaagcagccacaaatcaagggatgaacaaccatgtctttgttgcttattcttatgctgttggtacttctgttcttcttcctgtcac |
1895695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 269 - 316
Target Start/End: Original strand, 1877844 - 1877892
Alignment:
| Q |
269 |
ttaatttaagacaatcagcttt-aacttttattttggtttttgattaaa |
316 |
Q |
| |
|
|||||||||||||| ||||||| |||||| ||||||||||||||||||| |
|
|
| T |
1877844 |
ttaatttaagacaaccagcttttaactttcattttggtttttgattaaa |
1877892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 3e-19; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 422 - 543
Target Start/End: Original strand, 11537456 - 11537577
Alignment:
| Q |
422 |
atgacaagaaaatggtccttttacatggattgtctaccaattgtggtgattataggcaatgaatgtgttgacatggctttactcactttgttcaaagcag |
521 |
Q |
| |
|
|||| ||||| ||| || |||||||| |||| ||||||| |||| |||||||||||| |||| || |||||||| ||| ||||||||||||||||||| |
|
|
| T |
11537456 |
atgaaaagaagatgatctttttacatagattttctaccagttgtagtgattataggctatgagtgatgtgacatgggtttgctcactttgttcaaagcag |
11537555 |
T |
|
| Q |
522 |
ctacacttcaagggatgaacaa |
543 |
Q |
| |
|
| |||| |||||||||||||| |
|
|
| T |
11537556 |
caccactgcaagggatgaacaa |
11537577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 416 - 543
Target Start/End: Original strand, 11549123 - 11549249
Alignment:
| Q |
416 |
agaaaaatgacaagaaaatggtccttttacatggattgtctaccaattgtggtgattataggcaatgaatgtgttgacatggctttactcactttgttca |
515 |
Q |
| |
|
||||| |||| ||||| |||||| ||||||||||||| |||||| |||| ||||||||||| ||||||| |||||||| ||| | |||||||||| |
|
|
| T |
11549123 |
agaaagatgaaaagaagatggtctttttacatggattttctaccggttgtagtgattatagg-tatgaatgatgtgacatgggtttgttgactttgttca |
11549221 |
T |
|
| Q |
516 |
aagcagctacacttcaagggatgaacaa |
543 |
Q |
| |
|
||| ||| ||| |||||||||||||| |
|
|
| T |
11549222 |
aagaagcaccaccgcaagggatgaacaa |
11549249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University