View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13878_low_10 (Length: 429)
Name: NF13878_low_10
Description: NF13878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13878_low_10 |
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Alignment Details
Target: chr6 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 1 - 405
Target Start/End: Complemental strand, 25013617 - 25013207
Alignment:
| Q |
1 |
aaatcttacctctttgttcatttaccgacttaagtg--------tcagagggcttacgggtaccacccccactttcaatgatgctactttgctaacatta |
92 |
Q |
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|||||||||||||||||||||||||||||| ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25013617 |
aaatcttacctctttgttcatttaccgactgaagtgccactgtgtcagagtgcttacgggtaccacccccactttcaatgatgctactttgctaacatta |
25013518 |
T |
|
| Q |
93 |
ttcaattctacaattttgcaaagcttgagatgaaaatatgcaaagaaaaccaaatctgcaagttttcttttttcaacgattttcactcagacattaaagc |
192 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25013517 |
ttcaattctacaattttgcaaagcttgagacgaaaatatgcaaagaaaaccaaatctgcaagttttcttttttcaacgattttcactcagacattaaagc |
25013418 |
T |
|
| Q |
193 |
aaacagtttataggcaaatcaaattctgcatattttcttcttcgtcataatccaatgcatgtaaaaaagaggaacggggatgagggagggaacctgctgt |
292 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| ||||||||| |
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| T |
25013417 |
aaacagtttataggcaaatcaaattctgcatattttcttcttcgtcataatccaatgcatgtaaaaatgaggaacggg--tgagggagggcacctgctgt |
25013320 |
T |
|
| Q |
293 |
tggtcgtccacagccgtattttccgtcgccggcgtcctgcagtccacggttgtgtcgccgtcgtgggttggttaaaaattcttgtttcaagcgtcacaat |
392 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| ||||||| |
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| T |
25013319 |
tggtcgtccacagccgtattttccgtcgccggcgtcctgcagtccacggttgtgtcgccgtcgtgggttggttcagaattcttgtttcaagcttcacaat |
25013220 |
T |
|
| Q |
393 |
tttaggcggttac |
405 |
Q |
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||||||||||||| |
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| T |
25013219 |
tttaggcggttac |
25013207 |
T |
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