View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13878_low_11 (Length: 427)
Name: NF13878_low_11
Description: NF13878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13878_low_11 |
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| [»] scaffold0085 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 83 - 422
Target Start/End: Complemental strand, 52171431 - 52171088
Alignment:
| Q |
83 |
ggaagatcgttgtgcaaggattcaaaggaatgcttccttatatttataataacaaaaaagcaattttctaagnnnnnnnntgtaacaactttatataact |
182 |
Q |
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| T |
52171431 |
ggaagatcgttgtgcaaggattcaaaggaatgcttccttatatttataataacaaaaaagcaattttctaagaaaaaaaatgtaacaactttatatgact |
52171332 |
T |
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| Q |
183 |
nnnnnnncacaagaaatatgtgaatgggcttggcaactaatagagagaggcccaacgaagtgaagtagagttgaaaagctgcatcacttcact----gtg |
278 |
Q |
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| T |
52171331 |
aaaaaaacacaagaaatatgtgaatgggcttggcaactaatagagagaggcccaacgaagtgaagtagagttgaaaagctgcatcacttcactcactgtg |
52171232 |
T |
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| Q |
279 |
tagtagagagcaaaagagcaaagaatttacaacagttgcaatgaaactcgccggaatcaaatcgatagacaacgctcacgacgactccgtttgggcagtc |
378 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52171231 |
tagtagagagcaaaagagcaaagaatttacaacagttgcaatgaaactcgccggaatcaaatcgatagacaacgctcacgacgactccgtttgggcagtc |
52171132 |
T |
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| Q |
379 |
acatgggcaccggcaaccgccacccgaccacctcttcttctcac |
422 |
Q |
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| T |
52171131 |
acatgggcaccggcaaccgccacccgaccacctctccttctcac |
52171088 |
T |
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Target: scaffold0085 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: scaffold0085
Description:
Target: scaffold0085; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 83 - 134
Target Start/End: Original strand, 52734 - 52785
Alignment:
| Q |
83 |
ggaagatcgttgtgcaaggattcaaaggaatgcttccttatatttataataa |
134 |
Q |
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| T |
52734 |
ggaagatcattgtgcaaggattcaaaggaatgcttcctgatatttataataa |
52785 |
T |
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