View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13878_low_13 (Length: 402)
Name: NF13878_low_13
Description: NF13878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13878_low_13 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 359; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 19 - 402
Target Start/End: Original strand, 50421149 - 50421532
Alignment:
| Q |
19 |
catagaccatttataagaaaggctattaacaatatcttttatcgttttatatttgaaacgcagaggcataatggtatttgtgaattgcttgagattatgg |
118 |
Q |
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| T |
50421149 |
catagaccatttataagaaaggctattaacaatatcttttatcgttttatatttgaaacgcagaggcataatggtatttgtgaattgcttgagattatgg |
50421248 |
T |
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| Q |
119 |
ctagtattataaatggctttgctttacctatgaaagaggaacataagcnnnnnnngatcagggctcttattccacttcataaaccgaaatgtatttcgtc |
218 |
Q |
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| T |
50421249 |
ctagtattataaatggctttgctttacctatgaaagaggaacataagctttttttgatcagggctcttattccacttcataaaccgaaatgtatttcgtc |
50421348 |
T |
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| Q |
219 |
gtatcatcagaatttgtcttactgtgttgttcagtttgttgagaaagatggaaggttggctgatcctgtgataaaagggttggtgaagtattggcctgtt |
318 |
Q |
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| T |
50421349 |
ttatcatcagaatttgtcttactgtgttgttcagtttgttgagaaagatggaaggttggctgatcctgtgataaaagggttggtgaagtattggcctgtt |
50421448 |
T |
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| Q |
319 |
acgaattgtcataaggaagttctttttcttaatgagttagaagaggttcttgagtgtactcaacctcccgagtttgtgagatgc |
402 |
Q |
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| T |
50421449 |
acgaattgtcataaggaagttctttttcttaatgagttagaagaggttcttgagtgtactcaacctcccgagtttgtgagatgc |
50421532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 165
Target Start/End: Complemental strand, 27639738 - 27639592
Alignment:
| Q |
19 |
catagaccatttataagaaaggctattaacaatatcttttatcgttttatatttgaaacgcagaggcataatggtatttgtgaattgcttgagattatgg |
118 |
Q |
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| T |
27639738 |
catagaccgtttattagaaaagcaattaacaatattttttatcggtttatatatgagactgagcgacactgtggtattggggagcttttggagattttgg |
27639639 |
T |
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| Q |
119 |
ctagtattataaatggctttgctttacctatgaaagaggaacataag |
165 |
Q |
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| T |
27639638 |
gtagtattattaatgggtttgctttgcctatgaaagaggagcataag |
27639592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 302 - 348
Target Start/End: Complemental strand, 27639455 - 27639409
Alignment:
| Q |
302 |
tgaagtattggcctgttacgaattgtcataaggaagttctttttctt |
348 |
Q |
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| T |
27639455 |
tgaagtattggcctgttactaattgtcagaaggaaattctctttctt |
27639409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 302 - 347
Target Start/End: Original strand, 41351943 - 41351988
Alignment:
| Q |
302 |
tgaagtattggcctgttacgaattgtcataaggaagttctttttct |
347 |
Q |
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| T |
41351943 |
tgaagtattggccggtgactaattgtcaaaaggaagttctttttct |
41351988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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